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The map label for this gene is ydhO [C]

Identifier: 226947715

GI number: 226947715

Start: 610017

End: 610838

Strand: Direct

Name: ydhO [C]

Synonym: CLM_0563

Alternate gene names: 226947715

Gene position: 610017-610838 (Clockwise)

Preceding gene: 226947714

Following gene: 226947716

Centisome position: 14.68

GC content: 33.58

Gene sequence:

>822_bases
ATGAAAAAGAAGACAACTATATTAAGTATTTTTCTAGCTGTTTTTATGGCGTTAGCACTAAATGTAGGTAATGTTAAAGC
TGCAGCAACTGGACAAGATATAGTAAACTATGCTAAACAATTTCAAGGAACACCATATGTTTGGAATGGTACAACTCCAT
CAGGATTTGATTGTTCAGGTTTTGTACAATATGTGTATAGAAATTGTGCAGGTATAGAATTACCAAGAGATACATATGGA
CAAATTAAGGCAGGAACTAGAGTTTCAAGAGATCAATTACAGCCTGGAGATCTAGTATTTCCACATACAGGACATATAGG
TATATATGTTGGGGATGGTAAGATAATACATTCACCACAAACAGGAGATGTGGTAAAGATATCACCAATATGGAAGTTCT
ATGCGGGGGTAAGAATAAGTGGAATAACTAACTACTCAAAAGAATTCATTGCATCAGTTCAAAGAGATCTAAGAAAATCT
AGGTGTTATTCTGGAGAAGCAACAGGAAATATAGATCAAAAAACAAAAGACGCTATCTGGAAATTTAGAGGGATTGTAGG
ACTACCAGTTAATACTACTCTAGATAATTCAGTTGTTACTGCTTTAAATCAGATTGTTAAAAAACCAAGATTAACGGTTA
ATACAAATCTTACATATGCTACAAAATTTGTGCAATGGTGGATTGGTTCTGATAAAAGTGGAATATATGATAATAAGATG
AAAGAAAATGTACGTCAATGGCAAATAAAAGCAGGTGTGTGGAGTGCTGCAGGTGCAGATGGCATTATAAGAGAACAAGA
TTGGAATAAGATACTAAATTAA

Upstream 100 bases:

>100_bases
TAAAAAAAGAAGGAATTGAATTAATTGTAAAGAATATAAACATTATAACAAAAAATTATGACAAAAATACAAAATGAATA
GACAAACAGGAGGAAGCAAC

Downstream 100 bases:

>100_bases
CATACTAGAATAAAAAAGAAGTAGTTCTCATTATTTAAACAAAAAGAACCCTAATAAATAGGGTTCTTTTTGTTTGGGAT
TTGCCATATATTGATATAGG

Product: NlpC/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKKKTTILSIFLAVFMALALNVGNVKAAATGQDIVNYAKQFQGTPYVWNGTTPSGFDCSGFVQYVYRNCAGIELPRDTYG
QIKAGTRVSRDQLQPGDLVFPHTGHIGIYVGDGKIIHSPQTGDVVKISPIWKFYAGVRISGITNYSKEFIASVQRDLRKS
RCYSGEATGNIDQKTKDAIWKFRGIVGLPVNTTLDNSVVTALNQIVKKPRLTVNTNLTYATKFVQWWIGSDKSGIYDNKM
KENVRQWQIKAGVWSAAGADGIIREQDWNKILN

Sequences:

>Translated_273_residues
MKKKTTILSIFLAVFMALALNVGNVKAAATGQDIVNYAKQFQGTPYVWNGTTPSGFDCSGFVQYVYRNCAGIELPRDTYG
QIKAGTRVSRDQLQPGDLVFPHTGHIGIYVGDGKIIHSPQTGDVVKISPIWKFYAGVRISGITNYSKEFIASVQRDLRKS
RCYSGEATGNIDQKTKDAIWKFRGIVGLPVNTTLDNSVVTALNQIVKKPRLTVNTNLTYATKFVQWWIGSDKSGIYDNKM
KENVRQWQIKAGVWSAAGADGIIREQDWNKILN
>Mature_273_residues
MKKKTTILSIFLAVFMALALNVGNVKAAATGQDIVNYAKQFQGTPYVWNGTTPSGFDCSGFVQYVYRNCAGIELPRDTYG
QIKAGTRVSRDQLQPGDLVFPHTGHIGIYVGDGKIIHSPQTGDVVKISPIWKFYAGVRISGITNYSKEFIASVQRDLRKS
RCYSGEATGNIDQKTKDAIWKFRGIVGLPVNTTLDNSVVTALNQIVKKPRLTVNTNLTYATKFVQWWIGSDKSGIYDNKM
KENVRQWQIKAGVWSAAGADGIIREQDWNKILN

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase C40 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=118, Percent_Identity=38.135593220339, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788501, Length=106, Percent_Identity=40.5660377358491, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1786421, Length=118, Percent_Identity=38.9830508474576, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1788001, Length=96, Percent_Identity=40.625, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 30319; Mature: 30319

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKTTILSIFLAVFMALALNVGNVKAAATGQDIVNYAKQFQGTPYVWNGTTPSGFDCSG
CCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHH
FVQYVYRNCAGIELPRDTYGQIKAGTRVSRDQLQPGDLVFPHTGHIGIYVGDGKIIHSPQ
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEECCCCCEEEEEECCCEEEECCC
TGDVVKISPIWKFYAGVRISGITNYSKEFIASVQRDLRKSRCYSGEATGNIDQKTKDAIW
CCCEEEECHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KFRGIVGLPVNTTLDNSVVTALNQIVKKPRLTVNTNLTYATKFVQWWIGSDKSGIYDNKM
HHHCEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCCCCHHH
KENVRQWQIKAGVWSAAGADGIIREQDWNKILN
HHHHHHEEHHCCCCCCCCCCCCEECCHHHHHCC
>Mature Secondary Structure
MKKKTTILSIFLAVFMALALNVGNVKAAATGQDIVNYAKQFQGTPYVWNGTTPSGFDCSG
CCCHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHCCCCEEECCCCCCCCCHHH
FVQYVYRNCAGIELPRDTYGQIKAGTRVSRDQLQPGDLVFPHTGHIGIYVGDGKIIHSPQ
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCEECCCCCEEEEEECCCEEEECCC
TGDVVKISPIWKFYAGVRISGITNYSKEFIASVQRDLRKSRCYSGEATGNIDQKTKDAIW
CCCEEEECHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KFRGIVGLPVNTTLDNSVVTALNQIVKKPRLTVNTNLTYATKFVQWWIGSDKSGIYDNKM
HHHCEEECCCCCCCCHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHCCCCCCCCCCHHH
KENVRQWQIKAGVWSAAGADGIIREQDWNKILN
HHHHHHEEHHCCCCCCCCCCCCEECCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2780297 [H]