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The map label for this gene is ypdB [C]

Identifier: 226947531

GI number: 226947531

Start: 355732

End: 356472

Strand: Direct

Name: ypdB [C]

Synonym: CLM_0367

Alternate gene names: 226947531

Gene position: 355732-356472 (Clockwise)

Preceding gene: 226947530

Following gene: 226947532

Centisome position: 8.56

GC content: 22.0

Gene sequence:

>741_bases
ATGACCTATACTATAGCAATATGTGATGATGATCCTATACAAGTAAAAATAATTGAGAGCTATATACATAAATACGTTAA
TAGTAGTAATAGTAATGAAGAAGATGACTATATAATAATAGCTGAAGATAATTGTAAAAGGTTGTTAGACAAAATAAAAT
ATCATAGTGTAGATATATTTTTTTTAGATATTCAGATGAATGATATGAATGGAATAGATATTTCTATTAAAATTAAGAAA
AGATATAAAGACTCTATAATAGTATTTATTACTGGATTCGAGAAATATGCACTTAAAGCTTTCGAGATAAGAGCTTTTAA
TTATATAATGAAACCTTTAACATACGATAAATTTAAGACTACATTTGATGAGGTATGTACAGCAGTTAAAGATATACATT
ATATTAATAATAGTGAGGAGGAATTCATGGTAAATAATAAATTAGGTATTAATAAAATAAAATATAGAGATATATTTTAT
TTCGAAAAAAATTTACGTAAAATTAAAATAGTTTGTAAGAATCAAAATATAGAATATTATAGTTCTTTTAGAGAGCTTAA
GAATAACATAAATATGGCATTTTTTACGCAGTGTCATCAAAGTTTTATTGTAAATAATGATAAAATATCTTCATATGAGA
AGCAATTGATATATATAGAAGAATTAAATTTTTATATACCTGTGAGTAGAAGTTATATTGAAGTTGTCAAAAATATATTA
ACTGAGAATCTATTTAAATAA

Upstream 100 bases:

>100_bases
GGCAAGCTATATGTTAAAATACAGAAATTCTATTACAACATATAGATAAAAAATAATATTTATTGTAATAAATATTAAAT
AATAAGAAGGATTTGAGGTT

Downstream 100 bases:

>100_bases
AAAGGTCATATATGGAATTAAAGTGGTTTTTCTATGAATTTACAGTAAATATTATTGAGGCATTGCTAGCATATAATATG
CTTAAGATATTTTTTAGAAG

Product: two component transcriptional regulator, LytTR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTYTIAICDDDPIQVKIIESYIHKYVNSSNSNEEDDYIIIAEDNCKRLLDKIKYHSVDIFFLDIQMNDMNGIDISIKIKK
RYKDSIIVFITGFEKYALKAFEIRAFNYIMKPLTYDKFKTTFDEVCTAVKDIHYINNSEEEFMVNNKLGINKIKYRDIFY
FEKNLRKIKIVCKNQNIEYYSSFRELKNNINMAFFTQCHQSFIVNNDKISSYEKQLIYIEELNFYIPVSRSYIEVVKNIL
TENLFK

Sequences:

>Translated_246_residues
MTYTIAICDDDPIQVKIIESYIHKYVNSSNSNEEDDYIIIAEDNCKRLLDKIKYHSVDIFFLDIQMNDMNGIDISIKIKK
RYKDSIIVFITGFEKYALKAFEIRAFNYIMKPLTYDKFKTTFDEVCTAVKDIHYINNSEEEFMVNNKLGINKIKYRDIFY
FEKNLRKIKIVCKNQNIEYYSSFRELKNNINMAFFTQCHQSFIVNNDKISSYEKQLIYIEELNFYIPVSRSYIEVVKNIL
TENLFK
>Mature_245_residues
TYTIAICDDDPIQVKIIESYIHKYVNSSNSNEEDDYIIIAEDNCKRLLDKIKYHSVDIFFLDIQMNDMNGIDISIKIKKR
YKDSIIVFITGFEKYALKAFEIRAFNYIMKPLTYDKFKTTFDEVCTAVKDIHYINNSEEEFMVNNKLGINKIKYRDIFYF
EKNLRKIKIVCKNQNIEYYSSFRELKNNINMAFFTQCHQSFIVNNDKISSYEKQLIYIEELNFYIPVSRSYIEVVKNILT
ENLFK

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=217, Percent_Identity=23.963133640553, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87082052, Length=245, Percent_Identity=22.0408163265306, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 29447; Mature: 29316

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYTIAICDDDPIQVKIIESYIHKYVNSSNSNEEDDYIIIAEDNCKRLLDKIKYHSVDIF
CEEEEEEECCCCEEEEHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHCEEEEE
FLDIQMNDMNGIDISIKIKKRYKDSIIVFITGFEKYALKAFEIRAFNYIMKPLTYDKFKT
EEEEEECCCCCEEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHH
TFDEVCTAVKDIHYINNSEEEFMVNNKLGINKIKYRDIFYFEKNLRKIKIVCKNQNIEYY
HHHHHHHHHHHHHHCCCCCHHEEEECCCCCCEEEEEEEEEEECCCEEEEEEEECCCCHHH
SSFRELKNNINMAFFTQCHQSFIVNNDKISSYEKQLIYIEELNFYIPVSRSYIEVVKNIL
HHHHHHHHCCCEEEEHHHHHHHEECCCCCCCHHHEEEEEEECCEEEECCHHHHHHHHHHH
TENLFK
HHHCCC
>Mature Secondary Structure 
TYTIAICDDDPIQVKIIESYIHKYVNSSNSNEEDDYIIIAEDNCKRLLDKIKYHSVDIF
EEEEEEECCCCEEEEHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHCEEEEE
FLDIQMNDMNGIDISIKIKKRYKDSIIVFITGFEKYALKAFEIRAFNYIMKPLTYDKFKT
EEEEEECCCCCEEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHH
TFDEVCTAVKDIHYINNSEEEFMVNNKLGINKIKYRDIFYFEKNLRKIKIVCKNQNIEYY
HHHHHHHHHHHHHHCCCCCHHEEEECCCCCCEEEEEEEEEEECCCEEEEEEEECCCCHHH
SSFRELKNNINMAFFTQCHQSFIVNNDKISSYEKQLIYIEELNFYIPVSRSYIEVVKNIL
HHHHHHHHCCCEEEEHHHHHHHEECCCCCCCHHHEEEEEEECCEEEECCHHHHHHHHHHH
TENLFK
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]