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The map label for this gene is ykcB [H]

Identifier: 226947523

GI number: 226947523

Start: 345127

End: 347406

Strand: Direct

Name: ykcB [H]

Synonym: CLM_0357

Alternate gene names: 226947523

Gene position: 345127-347406 (Clockwise)

Preceding gene: 226947522

Following gene: 226947524

Centisome position: 8.31

GC content: 32.15

Gene sequence:

>2280_bases
ATGAAAAAGATAAAGTTTACAAAAGAGAATATAGCGTTATCGTTAATTTTGATATTATCTTTAATATTAAATTTAGCGAA
TTTGAACATAGAAGGATACGCAAATCAATATTATGCTGCAGGTGTAAAGAGTATGACTTTAAGTTTAAAGAACTTTTTCT
TTATATCCTTTGATCCAGCCAGTTTTGTAAGTATTGATAAGCCACCTTTGGGTTTTTGGATACAAGCTATATTTGCTAAA
ATATTTGGTTTTAGTGGATGGAGTATAATATTACCTCAGGCTATTGCAGGGGTAGTATCAGTAGGATTAATATATGTTAT
TGTTAAAAGAAGCTTTGGGACTGCTGCGGGTCTTATTTCTGCAATATGTCTTGCAGTTACGCCTGTTTTTGTAGCTGTAA
GTAGAAATAACACTTGTGATAATTTACTTGTTTTAACATTACTATTAGCTTGCTTAGTTCTTTCTAAGGCAGCAGAAAAA
GGGAAACTAAAATATCTTTTAATAAGTTTAGCAATTATAGGGATCGGATTTAATATAAAAATGCTTCAAGCATATATGAT
AATACCAGCTATATATATAACTTATCTTCTTTCTAATGCAGTATCCTTTAAAAAAAGAATAGTTCATCTTATGGCTGGTA
CAATTATTTTAATTTTAGTTTCATTGTCCTGGGCCTTTATTGTAGACTTAATACCTGAAGGAAATAGACCTTATGTAGGA
AGTAGTACTAATAATTCGGTTATGGGGCTTATAATAGGACATAATGGTCTTGAGAGACTTGGTATTGGTAGTAAATCAAC
TCAGGGTGGTGGGGCACCAGGAGGAATGGATGGGAAAAATCAGCAAAAAACTGATGGGACTTCCAGTGCAACTAAAAACA
AAAATTCAGAGCAAACATCAAAGGAGAATGGGCAAACCGGAGGAGAGACACCATCAATAGACAATGATCAAATGCAAGGA
CAACCTCCATCAATGGATAATGGAGAAATGCAAGGGGCACCTCCTAATACTCAAGATGGAGGAAAAGGGAATGCTAATCC
TCCTAGTGGTGACGGAAAAGGTCCCGGTGGAATGCCTCCAGGAGATAATGGAATGCAGAAGCCTAATGGAGGAGGAATGG
GAGGAACCTTTGGGGGCCAAGAAGTTGCAAGTGTTGCTAGATTATTCTCTAATAATAGTTTATCAGACCAAATTATTTGG
TTATTTCCCCTTGCCCTATTTGGATTTATAGCAGCGGCAATAAAAGAAAAGTTAAATAAGACTTTTGATAATAAAAGAAA
GTTGTCATTAGTACTATGGAGTATGTGGTTATTACCTGAATTTATATACTTCAGTTTTACAAAAGGGTTATTTCATCCTT
ATTATTTAACTATGCTTGCTCCGCCAATTGCGGCTTTGGCAGGAATTGGAATTGTGTCAATGTGGGAGTTATATAATGAG
GAAGGATGGAAATCTTGGATTTTACCAGTGGGACTTATTGCAGATGGATTAACTCAGATATTAATATTATCTTATTATTA
TAATATATCAAATACGGCTAAAATTTTAACTACAACAGTAGCAGTTTTATGTATTGTATCTTCCATTATACTAGCTATTG
TTAATTTAAGAAAAAATAAAAAAGATATATTAAAGTTTAAAAATATAAAATTTAAGAAATCACTGGTTACTATTGCTTTA
ATGGGCCTTTTAATAACTCCTTTAGTTTGTTCTGCTACTACAATTTTTTATCCAATGTCTGGGACTTTCCCATCTGCTGG
ATTATCATTAATGACTAATAAGCAAAAAGATGGTTTTAATATGGGTGATCCTAATAGTGGTAATACGAAGCTAATAGAAT
TTCTAAAGAGTCATAAAACAAATGAAAAATATCTTCTTGTTACTTCATCTACTAATGGTTATGCTTCAGATATAATTATC
AATACTGGAGAATCAATAATGGCACTTGGAGGTTTCTTTGGAACAGATAAAGTAATTACTTTAGATGAATTTAAAAAATT
AGTTAATAATGGAGAAGTTAGATATGTAATGGTAGGTGGTATGGGAGGAAACTCAAGTAGCGATATTATGAATTGGGTTA
AAGAAAATGGTAAAGTTGTTTCAGAAAGTGAATGGAAAAATTCAAATGAGATAAATAGTGAAGGAGTTAATAAGGATAAC
AATAATAAAGAAAACTCAAACTCAAATTTAAATACTAAACAATTCGGCCAAGAAGGAAAAGGGAATTCTGAACAGTTATA
TGATTTAAAAAATTATACTGATACCACAACAAAAAAATAG

Upstream 100 bases:

>100_bases
AAGATAACATGTAAATAAACATATAAAAAATAAGAAATACTTAATTTTAGAAATGGATAAAGTGAAAACTAACATATATT
TTGAGTGGGGGATATAAATA

Downstream 100 bases:

>100_bases
TTAATTATATATAGGGAAGCTTAGCATATAATGTTTCAACCCCACCACAGAAATGTGGTGGGTTTTATGTATTTAATACT
CTATTTTTTAAGTATATAAA

Product: dolichyl-phosphate-mannose-protein mannosyltransferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MKKIKFTKENIALSLILILSLILNLANLNIEGYANQYYAAGVKSMTLSLKNFFFISFDPASFVSIDKPPLGFWIQAIFAK
IFGFSGWSIILPQAIAGVVSVGLIYVIVKRSFGTAAGLISAICLAVTPVFVAVSRNNTCDNLLVLTLLLACLVLSKAAEK
GKLKYLLISLAIIGIGFNIKMLQAYMIIPAIYITYLLSNAVSFKKRIVHLMAGTIILILVSLSWAFIVDLIPEGNRPYVG
SSTNNSVMGLIIGHNGLERLGIGSKSTQGGGAPGGMDGKNQQKTDGTSSATKNKNSEQTSKENGQTGGETPSIDNDQMQG
QPPSMDNGEMQGAPPNTQDGGKGNANPPSGDGKGPGGMPPGDNGMQKPNGGGMGGTFGGQEVASVARLFSNNSLSDQIIW
LFPLALFGFIAAAIKEKLNKTFDNKRKLSLVLWSMWLLPEFIYFSFTKGLFHPYYLTMLAPPIAALAGIGIVSMWELYNE
EGWKSWILPVGLIADGLTQILILSYYYNISNTAKILTTTVAVLCIVSSIILAIVNLRKNKKDILKFKNIKFKKSLVTIAL
MGLLITPLVCSATTIFYPMSGTFPSAGLSLMTNKQKDGFNMGDPNSGNTKLIEFLKSHKTNEKYLLVTSSTNGYASDIII
NTGESIMALGGFFGTDKVITLDEFKKLVNNGEVRYVMVGGMGGNSSSDIMNWVKENGKVVSESEWKNSNEINSEGVNKDN
NNKENSNSNLNTKQFGQEGKGNSEQLYDLKNYTDTTTKK

Sequences:

>Translated_759_residues
MKKIKFTKENIALSLILILSLILNLANLNIEGYANQYYAAGVKSMTLSLKNFFFISFDPASFVSIDKPPLGFWIQAIFAK
IFGFSGWSIILPQAIAGVVSVGLIYVIVKRSFGTAAGLISAICLAVTPVFVAVSRNNTCDNLLVLTLLLACLVLSKAAEK
GKLKYLLISLAIIGIGFNIKMLQAYMIIPAIYITYLLSNAVSFKKRIVHLMAGTIILILVSLSWAFIVDLIPEGNRPYVG
SSTNNSVMGLIIGHNGLERLGIGSKSTQGGGAPGGMDGKNQQKTDGTSSATKNKNSEQTSKENGQTGGETPSIDNDQMQG
QPPSMDNGEMQGAPPNTQDGGKGNANPPSGDGKGPGGMPPGDNGMQKPNGGGMGGTFGGQEVASVARLFSNNSLSDQIIW
LFPLALFGFIAAAIKEKLNKTFDNKRKLSLVLWSMWLLPEFIYFSFTKGLFHPYYLTMLAPPIAALAGIGIVSMWELYNE
EGWKSWILPVGLIADGLTQILILSYYYNISNTAKILTTTVAVLCIVSSIILAIVNLRKNKKDILKFKNIKFKKSLVTIAL
MGLLITPLVCSATTIFYPMSGTFPSAGLSLMTNKQKDGFNMGDPNSGNTKLIEFLKSHKTNEKYLLVTSSTNGYASDIII
NTGESIMALGGFFGTDKVITLDEFKKLVNNGEVRYVMVGGMGGNSSSDIMNWVKENGKVVSESEWKNSNEINSEGVNKDN
NNKENSNSNLNTKQFGQEGKGNSEQLYDLKNYTDTTTKK
>Mature_759_residues
MKKIKFTKENIALSLILILSLILNLANLNIEGYANQYYAAGVKSMTLSLKNFFFISFDPASFVSIDKPPLGFWIQAIFAK
IFGFSGWSIILPQAIAGVVSVGLIYVIVKRSFGTAAGLISAICLAVTPVFVAVSRNNTCDNLLVLTLLLACLVLSKAAEK
GKLKYLLISLAIIGIGFNIKMLQAYMIIPAIYITYLLSNAVSFKKRIVHLMAGTIILILVSLSWAFIVDLIPEGNRPYVG
SSTNNSVMGLIIGHNGLERLGIGSKSTQGGGAPGGMDGKNQQKTDGTSSATKNKNSEQTSKENGQTGGETPSIDNDQMQG
QPPSMDNGEMQGAPPNTQDGGKGNANPPSGDGKGPGGMPPGDNGMQKPNGGGMGGTFGGQEVASVARLFSNNSLSDQIIW
LFPLALFGFIAAAIKEKLNKTFDNKRKLSLVLWSMWLLPEFIYFSFTKGLFHPYYLTMLAPPIAALAGIGIVSMWELYNE
EGWKSWILPVGLIADGLTQILILSYYYNISNTAKILTTTVAVLCIVSSIILAIVNLRKNKKDILKFKNIKFKKSLVTIAL
MGLLITPLVCSATTIFYPMSGTFPSAGLSLMTNKQKDGFNMGDPNSGNTKLIEFLKSHKTNEKYLLVTSSTNGYASDIII
NTGESIMALGGFFGTDKVITLDEFKKLVNNGEVRYVMVGGMGGNSSSDIMNWVKENGKVVSESEWKNSNEINSEGVNKDN
NNKENSNSNLNTKQFGQEGKGNSEQLYDLKNYTDTTTKK

Specific function: Unknown

COG id: COG1807

COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 39 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003342 [H]

Pfam domain/function: PF02366 PMT [H]

EC number: NA

Molecular weight: Translated: 82028; Mature: 82028

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIKFTKENIALSLILILSLILNLANLNIEGYANQYYAAGVKSMTLSLKNFFFISFDPA
CCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEEEECEEEEEEECCC
SFVSIDKPPLGFWIQAIFAKIFGFSGWSIILPQAIAGVVSVGLIYVIVKRSFGTAAGLIS
CEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AICLAVTPVFVAVSRNNTCDNLLVLTLLLACLVLSKAAEKGKLKYLLISLAIIGIGFNIK
HHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHH
MLQAYMIIPAIYITYLLSNAVSFKKRIVHLMAGTIILILVSLSWAFIVDLIPEGNRPYVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SSTNNSVMGLIIGHNGLERLGIGSKSTQGGGAPGGMDGKNQQKTDGTSSATKNKNSEQTS
CCCCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
KENGQTGGETPSIDNDQMQGQPPSMDNGEMQGAPPNTQDGGKGNANPPSGDGKGPGGMPP
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GDNGMQKPNGGGMGGTFGGQEVASVARLFSNNSLSDQIIWLFPLALFGFIAAAIKEKLNK
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TFDNKRKLSLVLWSMWLLPEFIYFSFTKGLFHPYYLTMLAPPIAALAGIGIVSMWELYNE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EGWKSWILPVGLIADGLTQILILSYYYNISNTAKILTTTVAVLCIVSSIILAIVNLRKNK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
KDILKFKNIKFKKSLVTIALMGLLITPLVCSATTIFYPMSGTFPSAGLSLMTNKQKDGFN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHEECCCCCCCC
MGDPNSGNTKLIEFLKSHKTNEKYLLVTSSTNGYASDIIINTGESIMALGGFFGTDKVIT
CCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCCCEEE
LDEFKKLVNNGEVRYVMVGGMGGNSSSDIMNWVKENGKVVSESEWKNSNEINSEGVNKDN
HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCC
NNKENSNSNLNTKQFGQEGKGNSEQLYDLKNYTDTTTKK
CCCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKKIKFTKENIALSLILILSLILNLANLNIEGYANQYYAAGVKSMTLSLKNFFFISFDPA
CCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHEEEECEEEEEEECCC
SFVSIDKPPLGFWIQAIFAKIFGFSGWSIILPQAIAGVVSVGLIYVIVKRSFGTAAGLIS
CEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AICLAVTPVFVAVSRNNTCDNLLVLTLLLACLVLSKAAEKGKLKYLLISLAIIGIGFNIK
HHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHH
MLQAYMIIPAIYITYLLSNAVSFKKRIVHLMAGTIILILVSLSWAFIVDLIPEGNRPYVG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
SSTNNSVMGLIIGHNGLERLGIGSKSTQGGGAPGGMDGKNQQKTDGTSSATKNKNSEQTS
CCCCCCEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH
KENGQTGGETPSIDNDQMQGQPPSMDNGEMQGAPPNTQDGGKGNANPPSGDGKGPGGMPP
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GDNGMQKPNGGGMGGTFGGQEVASVARLFSNNSLSDQIIWLFPLALFGFIAAAIKEKLNK
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
TFDNKRKLSLVLWSMWLLPEFIYFSFTKGLFHPYYLTMLAPPIAALAGIGIVSMWELYNE
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EGWKSWILPVGLIADGLTQILILSYYYNISNTAKILTTTVAVLCIVSSIILAIVNLRKNK
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
KDILKFKNIKFKKSLVTIALMGLLITPLVCSATTIFYPMSGTFPSAGLSLMTNKQKDGFN
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCHHEECCCCCCCC
MGDPNSGNTKLIEFLKSHKTNEKYLLVTSSTNGYASDIIINTGESIMALGGFFGTDKVIT
CCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECCCHHHHHCCCCCCCCEEE
LDEFKKLVNNGEVRYVMVGGMGGNSSSDIMNWVKENGKVVSESEWKNSNEINSEGVNKDN
HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCC
NNKENSNSNLNTKQFGQEGKGNSEQLYDLKNYTDTTTKK
CCCCCCCCCCCHHHHCCCCCCCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]