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The map label for this gene is pchR [H]

Identifier: 226947524

GI number: 226947524

Start: 347762

End: 348799

Strand: Direct

Name: pchR [H]

Synonym: CLM_0358

Alternate gene names: 226947524

Gene position: 347762-348799 (Clockwise)

Preceding gene: 226947523

Following gene: 226947525

Centisome position: 8.37

GC content: 28.03

Gene sequence:

>1038_bases
ATGAAAAATAAATTTCATATAAATACAAAACAAGGATGTTCATCAATGATTATGCAATATTCATCAATACGTACCCAATT
TGCAACGATACGAGATTCTATGAATTTTAGTAATGAAAAGGAAGTTATATATGATATAAAACCTCAATATGGTAAAGGCT
GCATAAAATTTTATAAACTTATGGGAAATGTGATGCTTATAATTTATGATACAATATTTAATCATGATATGATAACAGAA
TTTGACTTATCGGAAGAATATTTTGAAATAGAATATTGTGTTGATGGTTGCTTAAATATTCATGAAGATAAAGTAGGGAA
TATGTGTCTTTCTAAAAATGCACTTTCTATATCAATGTCTCGTGAAACCTGTGGAAGAGTAGTTAATTGTGCAGGTCAGA
AATATCAAGGGATCTCAATTACTGCTGAAAAATCAGCTATAGCATCATATTTTTGTAGCTGTGGGATTGAGCTATGGGAG
GATACGATAGAGGAATTGGAAAATGAACTTAGAAATCAGTATTATCAAGGAATAAATGTTTCTCCTGAAATAGCCAACAT
ATTTTTGCAAATATTTAATTGTAGTTTACCAGAGAAATCAAAAATTTTATTTTTTGAAAGTAAGGTAATGGAAATATTAT
CAAAAATAGTATCCTATGAAATTCTAGGGACAAATAAAATAAATCAATTGCAGCTGGATGAATTTGAAATTAATCAGATA
AAAAAGATACCAGAGGTGTTAATGAAAAATCTATATGAGCTTCCAACAGTAAATATTCTATCTAAGCAGCTAGCGATAAA
TAAGAATAAATTAGCAAAGGGATTTAAAGCAATATATGGTGATACTATATTCAGATATCATAGAAAAATATGTCTGGAGC
GTGCTGCTATATTATTATTAGATACTGACAAATCTATTAATGAAATTGCTCTTGATGTAGGATATTCAAATCCAAGTAAT
TTTTGTTATGCTTTTAAAAAGGAGTTTGGAGTAACCCCTTTGCAATATAAAGATGATTCCTTAAAACTTGTAAATTAA

Upstream 100 bases:

>100_bases
ATAGTCCATTGTCATATATTAAATATGAATTATATAAACATTGAAATAAATCATAGGAAGTAGAAAAAGATTTATTGAGG
ACAAGAAAGGAGCTCATGGA

Downstream 100 bases:

>100_bases
TTTTTCCCATAACTTTTATTTATTTAAATTGCCACAGGTGTAGTACCTGTGGCTTGTTTTATTGGGGAAATTTGGTTATC
TACTTATATATTTTGCAATA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MKNKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFSNEKEVIYDIKPQYGKGCIKFYKLMGNVMLIIYDTIFNHDMITE
FDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNALSISMSRETCGRVVNCAGQKYQGISITAEKSAIASYFCSCGIELWE
DTIEELENELRNQYYQGINVSPEIANIFLQIFNCSLPEKSKILFFESKVMEILSKIVSYEILGTNKINQLQLDEFEINQI
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKAIYGDTIFRYHRKICLERAAILLLDTDKSINEIALDVGYSNPSN
FCYAFKKEFGVTPLQYKDDSLKLVN

Sequences:

>Translated_345_residues
MKNKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFSNEKEVIYDIKPQYGKGCIKFYKLMGNVMLIIYDTIFNHDMITE
FDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNALSISMSRETCGRVVNCAGQKYQGISITAEKSAIASYFCSCGIELWE
DTIEELENELRNQYYQGINVSPEIANIFLQIFNCSLPEKSKILFFESKVMEILSKIVSYEILGTNKINQLQLDEFEINQI
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKAIYGDTIFRYHRKICLERAAILLLDTDKSINEIALDVGYSNPSN
FCYAFKKEFGVTPLQYKDDSLKLVN
>Mature_345_residues
MKNKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFSNEKEVIYDIKPQYGKGCIKFYKLMGNVMLIIYDTIFNHDMITE
FDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNALSISMSRETCGRVVNCAGQKYQGISITAEKSAIASYFCSCGIELWE
DTIEELENELRNQYYQGINVSPEIANIFLQIFNCSLPEKSKILFFESKVMEILSKIVSYEILGTNKINQLQLDEFEINQI
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKAIYGDTIFRYHRKICLERAAILLLDTDKSINEIALDVGYSNPSN
FCYAFKKEFGVTPLQYKDDSLKLVN

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39707; Mature: 39707

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFSNEKEVIYDIKPQYGKGCIKFYKL
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
MGNVMLIIYDTIFNHDMITEFDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNALSISMS
HCCEEEEEEHHHHCCCCEEEECCCCHHEEHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEC
RETCGRVVNCAGQKYQGISITAEKSAIASYFCSCGIELWEDTIEELENELRNQYYQGINV
HHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
SPEIANIFLQIFNCSLPEKSKILFFESKVMEILSKIVSYEILGTNKINQLQLDEFEINQI
CHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCEEEECCCCCCCEECCHHHHHHH
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKAIYGDTIFRYHRKICLERAAILLL
HHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
DTDKSINEIALDVGYSNPSNFCYAFKKEFGVTPLQYKDDSLKLVN
ECCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEECCCCEEECC
>Mature Secondary Structure
MKNKFHINTKQGCSSMIMQYSSIRTQFATIRDSMNFSNEKEVIYDIKPQYGKGCIKFYKL
CCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHH
MGNVMLIIYDTIFNHDMITEFDLSEEYFEIEYCVDGCLNIHEDKVGNMCLSKNALSISMS
HCCEEEEEEHHHHCCCCEEEECCCCHHEEHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEC
RETCGRVVNCAGQKYQGISITAEKSAIASYFCSCGIELWEDTIEELENELRNQYYQGINV
HHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
SPEIANIFLQIFNCSLPEKSKILFFESKVMEILSKIVSYEILGTNKINQLQLDEFEINQI
CHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCEEEECCCCCCCEECCHHHHHHH
KKIPEVLMKNLYELPTVNILSKQLAINKNKLAKGFKAIYGDTIFRYHRKICLERAAILLL
HHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEE
DTDKSINEIALDVGYSNPSNFCYAFKKEFGVTPLQYKDDSLKLVN
ECCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEECCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]