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The map label for this gene is yabF [H]

Identifier: 226947304

GI number: 226947304

Start: 105178

End: 105723

Strand: Direct

Name: yabF [H]

Synonym: CLM_0123

Alternate gene names: 226947304

Gene position: 105178-105723 (Clockwise)

Preceding gene: 226947303

Following gene: 226947305

Centisome position: 2.53

GC content: 32.42

Gene sequence:

>546_bases
ATGATTAAGGAAGTTATAGTAGTAGAAGGCAGAGATGATATTACAGCAGTAAAAAGAGCGGTAGATGCAGAGATGATAGC
AGTGGGTGGATTTGGAATAAATTCTAAGGTTATAAAAAAAATAAGAGAGGCGCAGAAAAGGCAAGGGGTAATAGTATTAA
CAGATCCTGATTATGCAGGAGAAAAGATAAGAAAATATATATGCAATAGGGTTAAGGGTGTAAAACATGCTTATATATCA
CAGGAAGAAGGAACAAAGGAAGATGATATAGGAGTAGAAAATGCAGCTCCAGAAGCCATAATAAGAGCGTTAAATTTAGC
TAAATGTGAAGTTAAGCAAGAAAGAAAAGAATTCGATATGAATGACATGATATTTTTTAAATTAACAGCGAATGATGAGT
CAAAAGAAAGAAGAGAAAAACTAGGGATGGCTTTAGGAATAGGCTATTGCAATACTAATCAGTTTATAAAAAGACTTAAC
AATTTTGGTATAACCAAAGAAGAGTTTACAAAGGCTATAAAAGATTTAGATAAGGGGAATGAATAA

Upstream 100 bases:

>100_bases
ATGGGTAAATGTTTATATTTTAGATTAATTTAAGTAGGAGCGTTAGCTCCTATTTTTTTCTATTAAAAATATTATATAAT
AGTTATATTGGAGGGATATT

Downstream 100 bases:

>100_bases
TATGAATACAAAGGAAATAGTTAACAAATATGAATTTAAGTTTAATAAGAATTTAGGACAAAACTTTTTAATAGATGAAT
CTGTATTGGAAGATATAATA

Product: primase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MIKEVIVVEGRDDITAVKRAVDAEMIAVGGFGINSKVIKKIREAQKRQGVIVLTDPDYAGEKIRKYICNRVKGVKHAYIS
QEEGTKEDDIGVENAAPEAIIRALNLAKCEVKQERKEFDMNDMIFFKLTANDESKERREKLGMALGIGYCNTNQFIKRLN
NFGITKEEFTKAIKDLDKGNE

Sequences:

>Translated_181_residues
MIKEVIVVEGRDDITAVKRAVDAEMIAVGGFGINSKVIKKIREAQKRQGVIVLTDPDYAGEKIRKYICNRVKGVKHAYIS
QEEGTKEDDIGVENAAPEAIIRALNLAKCEVKQERKEFDMNDMIFFKLTANDESKERREKLGMALGIGYCNTNQFIKRLN
NFGITKEEFTKAIKDLDKGNE
>Mature_181_residues
MIKEVIVVEGRDDITAVKRAVDAEMIAVGGFGINSKVIKKIREAQKRQGVIVLTDPDYAGEKIRKYICNRVKGVKHAYIS
QEEGTKEDDIGVENAAPEAIIRALNLAKCEVKQERKEFDMNDMIFFKLTANDESKERREKLGMALGIGYCNTNQFIKRLN
NFGITKEEFTKAIKDLDKGNE

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 20444; Mature: 20444

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKEVIVVEGRDDITAVKRAVDAEMIAVGGFGINSKVIKKIREAQKRQGVIVLTDPDYAG
CCCCEEEEECCCHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCH
EKIRKYICNRVKGVKHAYISQEEGTKEDDIGVENAAPEAIIRALNLAKCEVKQERKEFDM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
NDMIFFKLTANDESKERREKLGMALGIGYCNTNQFIKRLNNFGITKEEFTKAIKDLDKGN
CCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
E
C
>Mature Secondary Structure
MIKEVIVVEGRDDITAVKRAVDAEMIAVGGFGINSKVIKKIREAQKRQGVIVLTDPDYAG
CCCCEEEEECCCHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHCCEEEEECCCCCH
EKIRKYICNRVKGVKHAYISQEEGTKEDDIGVENAAPEAIIRALNLAKCEVKQERKEFDM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
NDMIFFKLTANDESKERREKLGMALGIGYCNTNQFIKRLNNFGITKEEFTKAIKDLDKGN
CCEEEEEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]