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The map label for this gene is rhaD [H]

Identifier: 226225396

GI number: 226225396

Start: 2903245

End: 2904066

Strand: Reverse

Name: rhaD [H]

Synonym: Lm4b_02819

Alternate gene names: 226225396

Gene position: 2904066-2903245 (Counterclockwise)

Preceding gene: 226225397

Following gene: 226225395

Centisome position: 99.7

GC content: 38.81

Gene sequence:

>822_bases
ATGACAAAGGATATAATGGATGCTGTTTTTATTAAGGAAATGGCGAAAACTACTTCAAATTTATACCGGTTAGGCTGGGA
TGAAAGAAACGGTGGAAATATCACTTATTTGTTGGATGAAAAAGAAGTTGTGGAATATTTAGATGTAAAGCAAATCATTC
GCACAATTCCAATGGACTTTGATGGTAAAAAGCTTGCTGGCAAGTATTTCTTAGTAACTGGTTCGGGTAAATATTTTAAA
AATGTTGAAGAAGCTCCAGCTGTGAATTTAGGTGTAATTCAAGTGAGTGAAGACGGGAAAGCAGTTCATTTGTTGTGGGG
CTATACAGACGGCGGACTACCAACGAGTGAACTTCCAGCGCATTTTATGAGTCACATTGCAAGACTTTCTGTGGATCCGG
AAAACCGCGTTGTTATGCATTGTCACGCTACTCATTTGCTCGCGATGACATTTACACATGAGCTAACGGAACGAGAATTT
ACAAGAACTTTATGGCAAATGTGTACGGAATGTTTAGTCGTTTTTCCAGAAGGTGTTGGGATTATTCCTTGGCTGGTTCC
TGGTACGAATGAAATTGGAGAAGCTACATCTGAAAAAATGAAGGAAAATCGTTTAATCGTTTGGCCACATCACGGGATTT
ATGGTGCGGGAAAATCAATGGATGAAACATTTGGATTAATTGAAACCGCGGAGAAAGCAGCAGAAGTTTATACTATTGTG
ATGTCACAAGGCGGTATTAAACAAGCGATTACAGATGAACAATTGAAAGCACTGGGTGAAAGATTTGGCGTTGAAGCAAA
GGCAGGTTATTTAAATAATTAG

Upstream 100 bases:

>100_bases
CTTCTGTGAAATTAATGGTGTCCCAGTTGGTCTTGACTGGTTGAAAGAAGTAAAAGCTTATGAAGAAGATGTATTACTAA
AAAGATAGGAGATAGTGACG

Downstream 100 bases:

>100_bases
GAGGTAACAATAATGGAACGAGTGGCATCTATTATGTATTTATATCCTGGTAATCAAGAAGAATATAAAAAAAGACACGA
CGCACTTTGGCCAGAAATGA

Product: rhamnulose-1-phosphate aldolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MTKDIMDAVFIKEMAKTTSNLYRLGWDERNGGNITYLLDEKEVVEYLDVKQIIRTIPMDFDGKKLAGKYFLVTGSGKYFK
NVEEAPAVNLGVIQVSEDGKAVHLLWGYTDGGLPTSELPAHFMSHIARLSVDPENRVVMHCHATHLLAMTFTHELTEREF
TRTLWQMCTECLVVFPEGVGIIPWLVPGTNEIGEATSEKMKENRLIVWPHHGIYGAGKSMDETFGLIETAEKAAEVYTIV
MSQGGIKQAITDEQLKALGERFGVEAKAGYLNN

Sequences:

>Translated_273_residues
MTKDIMDAVFIKEMAKTTSNLYRLGWDERNGGNITYLLDEKEVVEYLDVKQIIRTIPMDFDGKKLAGKYFLVTGSGKYFK
NVEEAPAVNLGVIQVSEDGKAVHLLWGYTDGGLPTSELPAHFMSHIARLSVDPENRVVMHCHATHLLAMTFTHELTEREF
TRTLWQMCTECLVVFPEGVGIIPWLVPGTNEIGEATSEKMKENRLIVWPHHGIYGAGKSMDETFGLIETAEKAAEVYTIV
MSQGGIKQAITDEQLKALGERFGVEAKAGYLNN
>Mature_272_residues
TKDIMDAVFIKEMAKTTSNLYRLGWDERNGGNITYLLDEKEVVEYLDVKQIIRTIPMDFDGKKLAGKYFLVTGSGKYFKN
VEEAPAVNLGVIQVSEDGKAVHLLWGYTDGGLPTSELPAHFMSHIARLSVDPENRVVMHCHATHLLAMTFTHELTEREFT
RTLWQMCTECLVVFPEGVGIIPWLVPGTNEIGEATSEKMKENRLIVWPHHGIYGAGKSMDETFGLIETAEKAAEVYTIVM
SQGGIKQAITDEQLKALGERFGVEAKAGYLNN

Specific function: Catalyzes the reversible cleavage of L-rhamnulose-1- phosphate to dihydroxyacetone phosphate (DHAP) and L-lactaldehyde [H]

COG id: COG0235

COG function: function code G; Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aldolase class II family. RhaD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790336, Length=271, Percent_Identity=51.2915129151292, Blast_Score=299, Evalue=1e-82,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001303
- InterPro:   IPR013447 [H]

Pfam domain/function: PF00596 Aldolase_II [H]

EC number: =4.1.2.19 [H]

Molecular weight: Translated: 30516; Mature: 30385

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKDIMDAVFIKEMAKTTSNLYRLGWDERNGGNITYLLDEKEVVEYLDVKQIIRTIPMDF
CCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
DGKKLAGKYFLVTGSGKYFKNVEEAPAVNLGVIQVSEDGKAVHLLWGYTDGGLPTSELPA
CCCEECCEEEEEECCCHHHHCHHHCCCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHH
HFMSHIARLSVDPENRVVMHCHATHLLAMTFTHELTEREFTRTLWQMCTECLVVFPEGVG
HHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
IIPWLVPGTNEIGEATSEKMKENRLIVWPHHGIYGAGKSMDETFGLIETAEKAAEVYTIV
EEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEE
MSQGGIKQAITDEQLKALGERFGVEAKAGYLNN
ECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TKDIMDAVFIKEMAKTTSNLYRLGWDERNGGNITYLLDEKEVVEYLDVKQIIRTIPMDF
CHHHHHHHHHHHHHHHHHHHEECCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCC
DGKKLAGKYFLVTGSGKYFKNVEEAPAVNLGVIQVSEDGKAVHLLWGYTDGGLPTSELPA
CCCEECCEEEEEECCCHHHHCHHHCCCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHH
HFMSHIARLSVDPENRVVMHCHATHLLAMTFTHELTEREFTRTLWQMCTECLVVFPEGVG
HHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCC
IIPWLVPGTNEIGEATSEKMKENRLIVWPHHGIYGAGKSMDETFGLIETAEKAAEVYTIV
EEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEE
MSQGGIKQAITDEQLKALGERFGVEAKAGYLNN
ECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]