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The map label for this gene is rhaA [H]

Identifier: 226225397

GI number: 226225397

Start: 2904079

End: 2905341

Strand: Reverse

Name: rhaA [H]

Synonym: Lm4b_02820

Alternate gene names: 226225397

Gene position: 2905341-2904079 (Counterclockwise)

Preceding gene: 226225398

Following gene: 226225396

Centisome position: 99.75

GC content: 38.8

Gene sequence:

>1263_bases
ATGGGACAAGAAACAGAAATTAGTAAACGATACCAAGTGGCGAAAGAACGTTATCAAGCAATTGGAGTTGATACGGAAAA
AGCGCTTAAAACACTGAAAGACATTAAAATTTCGATGCACTGCTGGCAAGGCGATGATGTTAAAGGTTTCTTAAATCCAG
ATGGCGAACTTACAGGCGGAATCATGGCGACCGGGAATTATCCGGGTGCGGCTCATACTCCTAAGCAATTACGCCAAGAT
TTGGAAAAAGCTTATTCACTTATTCCTGGAAAACATAAACTTAACTTACATGCAATTTACGTAGATACAGATGAAAAAGT
AGATTTAAATGAAATTGAACCTAAGCATTTCACTCCATGGGTAGAGTGGGCGAAAGAGCAGGGTTTGGGTCTGGATTTCA
ACCCAACTTTCTTTTCACATCCAATGTTTAAAGACAATTACACTTTAGCGTCACCAGATAAAGAAGTTCGCGATTTTTGG
ATAGAGCACGGGAAACGCTCGCGCAAAATTTCTGAGTACTTTGGGAAAGAACTTGGTCAAACAAGTATTAATAATTTCTG
GGTGCCGGATGGTATAAAAGATTGCCCGATTGATCGCTACACCCCGAGAAAACGTTTGATGGAAGCTTTAGATGAAGTTT
TTGCAGAAAAATTAGATGAAAAATATACCCAAGAAGCTGTAGAAAGTAAGTTGTTTGGTTTAGGCGCAGAGGCTTATACT
GTCGGTTCGCATGAATTTTATATGGGTTACGGAATTACGCGGGATAAATTGATTTGCTTGGATGCGGGACATTTCCATCC
AACTGAAGTCATTTCTAATAAATTATCTTCTTTGGCACTTTTCAGTAAAGGCGTAATGTTACATGTGAGTCGTCCAGTCC
GCTGGGATAGTGACCATGTGGTGATTATGGATGATGAATTAATTGAAATTGGTCGCGAATTGGTGCGCAATGATTTACTT
GGGATTACAAATATCGGTCTTGATTTCTTCGACGCAACAATCAATCGGATTGCTGCATGGGTTGTTGGAACTAGAAATAC
GCAAAAATCATTACTTAAAGCCCTTTTAGAACCTACAGCTGATTTGAAAAAAATGGAACTGGAAAATGACTTTACATCTC
GTATGGCAATTACAGAAGAACTAAAAGACTTCCCATTTGGCGATGTATGGAACTACTTCTGTGAAATTAATGGTGTCCCA
GTTGGTCTTGACTGGTTGAAAGAAGTAAAAGCTTATGAAGAAGATGTATTACTAAAAAGATAG

Upstream 100 bases:

>100_bases
TTCATTTGAAATTGGCGAATTTTCTTGTGGTGATGTGAGATTTGAGGAAATAAAAGAAAGATTTACTAAGGTACTTGAAT
TTAATTAGGAGGCTTTTAGA

Downstream 100 bases:

>100_bases
GAGATAGTGACGATGACAAAGGATATAATGGATGCTGTTTTTATTAAGGAAATGGCGAAAACTACTTCAAATTTATACCG
GTTAGGCTGGGATGAAAGAA

Product: L-rhamnose isomerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MGQETEISKRYQVAKERYQAIGVDTEKALKTLKDIKISMHCWQGDDVKGFLNPDGELTGGIMATGNYPGAAHTPKQLRQD
LEKAYSLIPGKHKLNLHAIYVDTDEKVDLNEIEPKHFTPWVEWAKEQGLGLDFNPTFFSHPMFKDNYTLASPDKEVRDFW
IEHGKRSRKISEYFGKELGQTSINNFWVPDGIKDCPIDRYTPRKRLMEALDEVFAEKLDEKYTQEAVESKLFGLGAEAYT
VGSHEFYMGYGITRDKLICLDAGHFHPTEVISNKLSSLALFSKGVMLHVSRPVRWDSDHVVIMDDELIEIGRELVRNDLL
GITNIGLDFFDATINRIAAWVVGTRNTQKSLLKALLEPTADLKKMELENDFTSRMAITEELKDFPFGDVWNYFCEINGVP
VGLDWLKEVKAYEEDVLLKR

Sequences:

>Translated_420_residues
MGQETEISKRYQVAKERYQAIGVDTEKALKTLKDIKISMHCWQGDDVKGFLNPDGELTGGIMATGNYPGAAHTPKQLRQD
LEKAYSLIPGKHKLNLHAIYVDTDEKVDLNEIEPKHFTPWVEWAKEQGLGLDFNPTFFSHPMFKDNYTLASPDKEVRDFW
IEHGKRSRKISEYFGKELGQTSINNFWVPDGIKDCPIDRYTPRKRLMEALDEVFAEKLDEKYTQEAVESKLFGLGAEAYT
VGSHEFYMGYGITRDKLICLDAGHFHPTEVISNKLSSLALFSKGVMLHVSRPVRWDSDHVVIMDDELIEIGRELVRNDLL
GITNIGLDFFDATINRIAAWVVGTRNTQKSLLKALLEPTADLKKMELENDFTSRMAITEELKDFPFGDVWNYFCEINGVP
VGLDWLKEVKAYEEDVLLKR
>Mature_419_residues
GQETEISKRYQVAKERYQAIGVDTEKALKTLKDIKISMHCWQGDDVKGFLNPDGELTGGIMATGNYPGAAHTPKQLRQDL
EKAYSLIPGKHKLNLHAIYVDTDEKVDLNEIEPKHFTPWVEWAKEQGLGLDFNPTFFSHPMFKDNYTLASPDKEVRDFWI
EHGKRSRKISEYFGKELGQTSINNFWVPDGIKDCPIDRYTPRKRLMEALDEVFAEKLDEKYTQEAVESKLFGLGAEAYTV
GSHEFYMGYGITRDKLICLDAGHFHPTEVISNKLSSLALFSKGVMLHVSRPVRWDSDHVVIMDDELIEIGRELVRNDLLG
ITNIGLDFFDATINRIAAWVVGTRNTQKSLLKALLEPTADLKKMELENDFTSRMAITEELKDFPFGDVWNYFCEINGVPV
GLDWLKEVKAYEEDVLLKR

Specific function: Metabolism of L-rhamnose; first step. [C]

COG id: COG4806

COG function: function code G; L-rhamnose isomerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnose isomerase family [H]

Homologues:

Organism=Escherichia coli, GI48994990, Length=416, Percent_Identity=56.9711538461538, Blast_Score=538, Evalue=1e-154,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009308
- InterPro:   IPR013022 [H]

Pfam domain/function: PF06134 RhaA [H]

EC number: =5.3.1.14 [H]

Molecular weight: Translated: 48051; Mature: 47920

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQETEISKRYQVAKERYQAIGVDTEKALKTLKDIKISMHCWQGDDVKGFLNPDGELTGG
CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCC
IMATGNYPGAAHTPKQLRQDLEKAYSLIPGKHKLNLHAIYVDTDEKVDLNEIEPKHFTPW
EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHH
VEWAKEQGLGLDFNPTFFSHPMFKDNYTLASPDKEVRDFWIEHGKRSRKISEYFGKELGQ
HHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCC
TSINNFWVPDGIKDCPIDRYTPRKRLMEALDEVFAEKLDEKYTQEAVESKLFGLGAEAYT
CCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VGSHEFYMGYGITRDKLICLDAGHFHPTEVISNKLSSLALFSKGVMLHVSRPVRWDSDHV
ECCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCEECCCCE
VIMDDELIEIGRELVRNDLLGITNIGLDFFDATINRIAAWVVGTRNTQKSLLKALLEPTA
EEECHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
DLKKMELENDFTSRMAITEELKDFPFGDVWNYFCEINGVPVGLDWLKEVKAYEEDVLLKR
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCEECHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GQETEISKRYQVAKERYQAIGVDTEKALKTLKDIKISMHCWQGDDVKGFLNPDGELTGG
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCC
IMATGNYPGAAHTPKQLRQDLEKAYSLIPGKHKLNLHAIYVDTDEKVDLNEIEPKHFTPW
EEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCHH
VEWAKEQGLGLDFNPTFFSHPMFKDNYTLASPDKEVRDFWIEHGKRSRKISEYFGKELGQ
HHHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHCC
TSINNFWVPDGIKDCPIDRYTPRKRLMEALDEVFAEKLDEKYTQEAVESKLFGLGAEAYT
CCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VGSHEFYMGYGITRDKLICLDAGHFHPTEVISNKLSSLALFSKGVMLHVSRPVRWDSDHV
ECCCEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCEECCCCE
VIMDDELIEIGRELVRNDLLGITNIGLDFFDATINRIAAWVVGTRNTQKSLLKALLEPTA
EEECHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
DLKKMELENDFTSRMAITEELKDFPFGDVWNYFCEINGVPVGLDWLKEVKAYEEDVLLKR
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCEECHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]