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The map label for this gene is licT [H]

Identifier: 226225325

GI number: 226225325

Start: 2828910

End: 2829746

Strand: Reverse

Name: licT [H]

Synonym: Lm4b_02748

Alternate gene names: 226225325

Gene position: 2829746-2828910 (Counterclockwise)

Preceding gene: 226225326

Following gene: 226225324

Centisome position: 97.15

GC content: 33.57

Gene sequence:

>837_bases
TTGAGAATTGAGAGGATTTTAAATAATAATATTGTAAGTGCGATTGACGAGGATGCGCAGGAATTGCTGATTTTGGGAAA
GGGGCTTGGCTTTAATTCTAAAGTTGGCGATCCAATTAATGAATCGAAAATCGAAAAAGTTTTTGAGTTGAAAGATGACA
CAATGGATAAGTTTAAAATGATTGTAAATGAAATTCCAATACAATTTTTAGAAGTAACTGACGATATTGTGAAGCTTTTC
AAAATGAAAACGACGAAAGATATTAGTGATGTCATCTATATTTCTCTTTCGGATCATCTGTACTTTGCCACGCAACGTTT
GCAAGAAAACGTGGTTATCGAAAATCCGCTCTCGTGGGAAGTGAAACGCTTTTATCAGGAAGAATACGCAGTGGCCAAAG
AGGCTGCGAAAATGGTGGAAAGTAAGCTTGAAATAGAGCTTCCTGATGCAGAAATTTCTAATATAGCGCTACATTTTGTT
AATGCGGAAGTAGATAGTGATATGAACGACGTCACACACATTATGCAGTTAATTCAAGAAATTATTTCTATTATTAAATA
TCATTTTAACATTGAATTTGATGAAGAAAGTACGAATTATTATCGTTTTATGACCCATCTGAAGTTTTTCTGTCAACGCG
TAATTATTGGCGAGACAATTGACGAAATGGATGAATTTCTTTATCAAACAGTGAAGAAAAGTAGAGGCGCTATTTTCGAA
TGTATTGATAAAATTGGTGTGTTTTTGGAAAAGAATTATCAATTTACGATGAGTCATTCGGAACAGTTTTATCTGGCGCT
TCATATTGAACGGCTTTTAAAAAGAAAAAATAACTAA

Upstream 100 bases:

>100_bases
GCTTGTTACCGGTAATGCGGGCAATACCAGATATTAGTTTTTTTGGCTGATATGTGTGGTATTGCTCTTTTTATTTTGCT
TCAAATAGGTGGTGATTTGT

Downstream 100 bases:

>100_bases
TAGGCTTGTTACCGCGATTTGCGGGCAATACCTGGATGATTGTATGCTTTTTTAGGTGCATTTCATTCAGGTTTTTCTAT
TATATTTAGGAGGATTAGCA

Product: transcription antiterminator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MRIERILNNNIVSAIDEDAQELLILGKGLGFNSKVGDPINESKIEKVFELKDDTMDKFKMIVNEIPIQFLEVTDDIVKLF
KMKTTKDISDVIYISLSDHLYFATQRLQENVVIENPLSWEVKRFYQEEYAVAKEAAKMVESKLEIELPDAEISNIALHFV
NAEVDSDMNDVTHIMQLIQEIISIIKYHFNIEFDEESTNYYRFMTHLKFFCQRVIIGETIDEMDEFLYQTVKKSRGAIFE
CIDKIGVFLEKNYQFTMSHSEQFYLALHIERLLKRKNN

Sequences:

>Translated_278_residues
MRIERILNNNIVSAIDEDAQELLILGKGLGFNSKVGDPINESKIEKVFELKDDTMDKFKMIVNEIPIQFLEVTDDIVKLF
KMKTTKDISDVIYISLSDHLYFATQRLQENVVIENPLSWEVKRFYQEEYAVAKEAAKMVESKLEIELPDAEISNIALHFV
NAEVDSDMNDVTHIMQLIQEIISIIKYHFNIEFDEESTNYYRFMTHLKFFCQRVIIGETIDEMDEFLYQTVKKSRGAIFE
CIDKIGVFLEKNYQFTMSHSEQFYLALHIERLLKRKNN
>Mature_278_residues
MRIERILNNNIVSAIDEDAQELLILGKGLGFNSKVGDPINESKIEKVFELKDDTMDKFKMIVNEIPIQFLEVTDDIVKLF
KMKTTKDISDVIYISLSDHLYFATQRLQENVVIENPLSWEVKRFYQEEYAVAKEAAKMVESKLEIELPDAEISNIALHFV
NAEVDSDMNDVTHIMQLIQEIISIIKYHFNIEFDEESTNYYRFMTHLKFFCQRVIIGETIDEMDEFLYQTVKKSRGAIFE
CIDKIGVFLEKNYQFTMSHSEQFYLALHIERLLKRKNN

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=275, Percent_Identity=36.7272727272727, Blast_Score=221, Evalue=4e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32680; Mature: 32680

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIERILNNNIVSAIDEDAQELLILGKGLGFNSKVGDPINESKIEKVFELKDDTMDKFKM
CCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
IVNEIPIQFLEVTDDIVKLFKMKTTKDISDVIYISLSDHLYFATQRLQENVVIENPLSWE
HHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCEECCCCCHH
VKRFYQEEYAVAKEAAKMVESKLEIELPDAEISNIALHFVNAEVDSDMNDVTHIMQLIQE
HHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHEEEEEEECHHCCCHHHHHHHHHHHHH
IISIIKYHFNIEFDEESTNYYRFMTHLKFFCQRVIIGETIDEMDEFLYQTVKKSRGAIFE
HHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
CIDKIGVFLEKNYQFTMSHSEQFYLALHIERLLKRKNN
HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRIERILNNNIVSAIDEDAQELLILGKGLGFNSKVGDPINESKIEKVFELKDDTMDKFKM
CCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHH
IVNEIPIQFLEVTDDIVKLFKMKTTKDISDVIYISLSDHLYFATQRLQENVVIENPLSWE
HHHHHCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHCCCEECCCCCHH
VKRFYQEEYAVAKEAAKMVESKLEIELPDAEISNIALHFVNAEVDSDMNDVTHIMQLIQE
HHHHHHHHHHHHHHHHHHHHHHCCEECCCCHHHHEEEEEEECHHCCCHHHHHHHHHHHHH
IISIIKYHFNIEFDEESTNYYRFMTHLKFFCQRVIIGETIDEMDEFLYQTVKKSRGAIFE
HHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
CIDKIGVFLEKNYQFTMSHSEQFYLALHIERLLKRKNN
HHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]