Click here to switch to the map view.

The map label for this gene is yybA [H]

Identifier: 226225277

GI number: 226225277

Start: 2770950

End: 2771399

Strand: Reverse

Name: yybA [H]

Synonym: Lm4b_02700

Alternate gene names: 226225277

Gene position: 2771399-2770950 (Counterclockwise)

Preceding gene: 226225281

Following gene: 226225276

Centisome position: 95.15

GC content: 37.56

Gene sequence:

>450_bases
ATGGCAGATAGACAGGAAAGCTTAGCGAAAGCCATCGCAATTATTCATCGTTCAGAAAGCACTTTTAAAAATAAAAAATT
ACTAGAAACTGGTCTTAATATAGGTCAATTACGTTATTTATGGACGCTTTATAAAGAAGATGGTATTTCCCAAGAATCTA
TGGCTAAAAGGTTTATGGTTGATAAAGCAAGTGTGACAAGGCATATTAAGCGTTTGGAAGAACTGGGGATGATTCGCCGC
GAAATTGATGCGAAAGATAGACGTATTCAGCGGATTTTTGTGACGGAAACTGGTTTTCAGATGCGCGATTTAATTGAAGA
AGTGACAGCCGAATGGTCCGCACTTTTAACAGCGAATTTTAGTGAAAAGGAAAAAGATGACTTAATGCATTTGATAGGAC
GACTTTCAGATAATGCGATTATAGCAGTCGAAGGAGGAGAATCTGAATGA

Upstream 100 bases:

>100_bases
GAAATAAAAAGGTTGCGCAGTCAACTAAAATCCTGCTATACTATAATGGTTGACGCCGCAACTAATTATGTGGCGGATTT
TTTTATGAGGAGTCGGATAA

Downstream 100 bases:

>100_bases
AAGAACAGAGTAAACGATTAGGTGAAGATAGCATTCCTTCACTCATGGCGAGATTGTCGATACCGGCATTTATCGGCATG
TTTGTTATGGGGATGTATAA

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MADRQESLAKAIAIIHRSESTFKNKKLLETGLNIGQLRYLWTLYKEDGISQESMAKRFMVDKASVTRHIKRLEELGMIRR
EIDAKDRRIQRIFVTETGFQMRDLIEEVTAEWSALLTANFSEKEKDDLMHLIGRLSDNAIIAVEGGESE

Sequences:

>Translated_149_residues
MADRQESLAKAIAIIHRSESTFKNKKLLETGLNIGQLRYLWTLYKEDGISQESMAKRFMVDKASVTRHIKRLEELGMIRR
EIDAKDRRIQRIFVTETGFQMRDLIEEVTAEWSALLTANFSEKEKDDLMHLIGRLSDNAIIAVEGGESE
>Mature_148_residues
ADRQESLAKAIAIIHRSESTFKNKKLLETGLNIGQLRYLWTLYKEDGISQESMAKRFMVDKASVTRHIKRLEELGMIRRE
IDAKDRRIQRIFVTETGFQMRDLIEEVTAEWSALLTANFSEKEKDDLMHLIGRLSDNAIIAVEGGESE

Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 17186; Mature: 17055

Theoretical pI: Translated: 6.29; Mature: 6.29

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRQESLAKAIAIIHRSESTFKNKKLLETGLNIGQLRYLWTLYKEDGISQESMAKRFMV
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
DKASVTRHIKRLEELGMIRREIDAKDRRIQRIFVTETGFQMRDLIEEVTAEWSALLTANF
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCC
SEKEKDDLMHLIGRLSDNAIIAVEGGESE
CCCHHHHHHHHHHHCCCCEEEEEECCCCC
>Mature Secondary Structure 
ADRQESLAKAIAIIHRSESTFKNKKLLETGLNIGQLRYLWTLYKEDGISQESMAKRFMV
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH
DKASVTRHIKRLEELGMIRREIDAKDRRIQRIFVTETGFQMRDLIEEVTAEWSALLTANF
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHCCC
SEKEKDDLMHLIGRLSDNAIIAVEGGESE
CCCHHHHHHHHHHHCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]