Click here to switch to the map view.

The map label for this gene is ycbL [C]

Identifier: 226224774

GI number: 226224774

Start: 2250741

End: 2251358

Strand: Reverse

Name: ycbL [C]

Synonym: Lm4b_02192

Alternate gene names: 226224774

Gene position: 2251358-2250741 (Counterclockwise)

Preceding gene: 226224777

Following gene: 226224773

Centisome position: 77.29

GC content: 35.28

Gene sequence:

>618_bases
ATGACAAAAATCAAACGAATCATGACAGGAATAATCCAAGAAAATTGTTATATCATTTATCAAGATAAGGTAGCTTTAAT
TGTTGACCCAGGCGATGAAGCAAGTAAAATTGAAGCAGAAATTGCAAAACTTGAAGTAAAACCAGTGGCAGTTTTGTTAA
CTCATTGTCACTATGATCATATTGGTGCTTTAGAAGAGATTCGCAAAACATATAATATTCCAGTATATGTTAGCCCACTA
GAGCAAGAATGGTTATCCAATCCAGAATTAAATTTATCTGCGCACATAGCTGGTAAAGCAATTATAGCGCAACCGGCAGA
AAATGAATTTACGTTAGGTGAATATAGTATAGAAGGTTTTCGTTTTAAAGTAGTACCGACACCAGGGCATTCTATCGGAA
GCGTTAGTTTTATTTTCGATGATTTTGTCGTAGTTGGCGACGCTTTGTTTAAAGGTAGTATCGGTCGTACGGATTTATAC
ACAGGAGATTTCGATATGTTAATAAATAGTATTAAAACACAACTGTTTGTACTTCCAGATGACTTCCCAGCCTATTCAGG
TCATGGTGATGCAACCACTATCGGTCATGAAAAGAAAACAAACCCATATTTTAACTAA

Upstream 100 bases:

>100_bases
ATTGTAGTATATCTCGGAAGTGAATACAAACAAGGAATATTGATGGAAGTAAGGTGGCTTTTTAGGTATAATGATGAATG
TGAAGAAAGGCGGAAGTGAA

Downstream 100 bases:

>100_bases
AAAAGAACTTGCAGAAGCATTTATTCTGCAGTTTTTTTGTAATCAATGGAAAGGATGTTGGAAAATGCATTCAGATGAGG
AAATTTTCAAAGAAACAACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTKIKRIMTGIIQENCYIIYQDKVALIVDPGDEASKIEAEIAKLEVKPVAVLLTHCHYDHIGALEEIRKTYNIPVYVSPL
EQEWLSNPELNLSAHIAGKAIIAQPAENEFTLGEYSIEGFRFKVVPTPGHSIGSVSFIFDDFVVVGDALFKGSIGRTDLY
TGDFDMLINSIKTQLFVLPDDFPAYSGHGDATTIGHEKKTNPYFN

Sequences:

>Translated_205_residues
MTKIKRIMTGIIQENCYIIYQDKVALIVDPGDEASKIEAEIAKLEVKPVAVLLTHCHYDHIGALEEIRKTYNIPVYVSPL
EQEWLSNPELNLSAHIAGKAIIAQPAENEFTLGEYSIEGFRFKVVPTPGHSIGSVSFIFDDFVVVGDALFKGSIGRTDLY
TGDFDMLINSIKTQLFVLPDDFPAYSGHGDATTIGHEKKTNPYFN
>Mature_204_residues
TKIKRIMTGIIQENCYIIYQDKVALIVDPGDEASKIEAEIAKLEVKPVAVLLTHCHYDHIGALEEIRKTYNIPVYVSPLE
QEWLSNPELNLSAHIAGKAIIAQPAENEFTLGEYSIEGFRFKVVPTPGHSIGSVSFIFDDFVVVGDALFKGSIGRTDLYT
GDFDMLINSIKTQLFVLPDDFPAYSGHGDATTIGHEKKTNPYFN

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI41327741, Length=192, Percent_Identity=26.5625, Blast_Score=68, Evalue=7e-12,
Organism=Escherichia coli, GI1787158, Length=201, Percent_Identity=37.3134328358209, Blast_Score=120, Evalue=9e-29,
Organism=Escherichia coli, GI1786406, Length=164, Percent_Identity=31.7073170731707, Blast_Score=65, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17538952, Length=186, Percent_Identity=28.494623655914, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 22794; Mature: 22663

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIKRIMTGIIQENCYIIYQDKVALIVDPGDEASKIEAEIAKLEVKPVAVLLTHCHYDH
CCHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCHHHHHHHHHEECCHHEEEEECCCCHH
IGALEEIRKTYNIPVYVSPLEQEWLSNPELNLSAHIAGKAIIAQPAENEFTLGEYSIEGF
HHHHHHHHHHHCCCEEECCCHHHHCCCCCCEEEEEECCCEEEECCCCCCEEEEEEEECCE
RFKVVPTPGHSIGSVSFIFDDFVVVGDALFKGSIGRTDLYTGDFDMLINSIKTQLFVLPD
EEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHCEEEEEECC
DFPAYSGHGDATTIGHEKKTNPYFN
CCCCCCCCCCCEECCCCCCCCCCCC
>Mature Secondary Structure 
TKIKRIMTGIIQENCYIIYQDKVALIVDPGDEASKIEAEIAKLEVKPVAVLLTHCHYDH
CHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCHHHHHHHHHEECCHHEEEEECCCCHH
IGALEEIRKTYNIPVYVSPLEQEWLSNPELNLSAHIAGKAIIAQPAENEFTLGEYSIEGF
HHHHHHHHHHHCCCEEECCCHHHHCCCCCCEEEEEECCCEEEECCCCCCEEEEEEEECCE
RFKVVPTPGHSIGSVSFIFDDFVVVGDALFKGSIGRTDLYTGDFDMLINSIKTQLFVLPD
EEEEEECCCCCCCEEHHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHHCEEEEEECC
DFPAYSGHGDATTIGHEKKTNPYFN
CCCCCCCCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA