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The map label for this gene is ydeC [H]

Identifier: 226224771

GI number: 226224771

Start: 2248109

End: 2248987

Strand: Reverse

Name: ydeC [H]

Synonym: Lm4b_02189

Alternate gene names: 226224771

Gene position: 2248987-2248109 (Counterclockwise)

Preceding gene: 226224772

Following gene: 226224770

Centisome position: 77.21

GC content: 36.18

Gene sequence:

>879_bases
ATGAGCGAATACTTGGAAATTCCAGAATTAAATAAAGCTTTTCCTTTTCGTTCGTTTATTAATGAAGGGGAAGTTCTTGT
TTATCCACACTGGCACAAAGAGATTGAAATTATTTATGCGCTAAAAGGTAGCCTTAATCTTGGCGTTAATGATATGCCAA
TTCAATTAAAAGAAGGAGAAATTCAAGTAATAAATGGCGGAGATGTGCATTATTTTTTAGCTTCGCCGAGTAGTGAGCGC
ATCGTTATCCAATTTGATTTAAGTTTATTTCAAGAAGAAATGCAAATGGATGGCCAAATGCAAACGTTGCGCGAAATGCT
TACAGAAATGGCACATTTGAGCAGGGAATGGCCAGAAGAGACGGTTGCTAAAATGCAATCTTTAATTATGAATATCCATT
CTGAGTCAAGCGGGGAAAAGCCTGGGAAGCATTATATTCTAAAAGCAGACCTACTAGCGATTATCGGCTTGATATACCGG
GAAATTCCTCAAATCAAAACTCAACCCGATAGTGTGATTTCAGAAGATGCAGTCTTAAAATCTCAAGAAACATTACATAA
ATTAGATCAAATTTTTTCCTATGTCGAGAAACACTATCAAGAACCGGTCAGCTTACAAGAAGTAGCTGATTACACTGGAT
TTAGCACGTACTATTTCACAAAATTTTTCAAGCGAAATACTGGTATGACGTTTGTGACTTTTTTAAATGATTACCGCCTG
AATAAAGCAAAATGGATGTTGTTAAATGAAGCTTTCCCTGTTACAGAAGTGGCCGAACTAGCAGGATTTAGTAGTGTAAA
AACCTTTCATCATGCCTTTAAACGAGCAATGGGTGTAGCACCATTAAAATACAGAAAGACAATATACGGGAATAATTAA

Upstream 100 bases:

>100_bases
TGAAATTCCCTATGAATCATTAATTTTATAAACTTAAGAAGATAGTTTAACGGCTGTCTTCTTTTTTATGCTAAAATGAA
AGAAAAAAAGGAGTTTCACT

Downstream 100 bases:

>100_bases
GCAATAAAATAGGAAGATTTACCTCTAGTAGTTTTGTATGATGTAACTATCAAAACTATTGGAGGTTTTTTATTATGACA
TTAAAAGTTGGAATTATAGG

Product: transcriptional regulator (AraC/XylS family)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MSEYLEIPELNKAFPFRSFINEGEVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQLKEGEIQVINGGDVHYFLASPSSER
IVIQFDLSLFQEEMQMDGQMQTLREMLTEMAHLSREWPEETVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYR
EIPQIKTQPDSVISEDAVLKSQETLHKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFTKFFKRNTGMTFVTFLNDYRL
NKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTIYGNN

Sequences:

>Translated_292_residues
MSEYLEIPELNKAFPFRSFINEGEVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQLKEGEIQVINGGDVHYFLASPSSER
IVIQFDLSLFQEEMQMDGQMQTLREMLTEMAHLSREWPEETVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYR
EIPQIKTQPDSVISEDAVLKSQETLHKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFTKFFKRNTGMTFVTFLNDYRL
NKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTIYGNN
>Mature_291_residues
SEYLEIPELNKAFPFRSFINEGEVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQLKEGEIQVINGGDVHYFLASPSSERI
VIQFDLSLFQEEMQMDGQMQTLREMLTEMAHLSREWPEETVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYRE
IPQIKTQPDSVISEDAVLKSQETLHKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFTKFFKRNTGMTFVTFLNDYRLN
KAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTIYGNN

Specific function: May Be A Transcriptional Activator Of Genes Involved In The Multiple Antibiotic Resistance (Mar) Phenotype. It Can Also Activate Genes Such As Soda, Zwf And Micf. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33753; Mature: 33622

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEYLEIPELNKAFPFRSFINEGEVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQLKEGE
CCCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEECCE
IQVINGGDVHYFLASPSSERIVIQFDLSLFQEEMQMDGQMQTLREMLTEMAHLSREWPEE
EEEEECCCEEEEEECCCCCEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
TVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYREIPQIKTQPDSVISEDAVLK
HHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
SQETLHKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFTKFFKRNTGMTFVTFLNDYRL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEHHHHCC
NKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTIYGNN
CHHHEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC
>Mature Secondary Structure 
SEYLEIPELNKAFPFRSFINEGEVLVYPHWHKEIEIIYALKGSLNLGVNDMPIQLKEGE
CCCCCCCCCCCCCCHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCCEEEECCE
IQVINGGDVHYFLASPSSERIVIQFDLSLFQEEMQMDGQMQTLREMLTEMAHLSREWPEE
EEEEECCCEEEEEECCCCCEEEEEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH
TVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYREIPQIKTQPDSVISEDAVLK
HHHHHHHHHHHHHCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
SQETLHKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYYFTKFFKRNTGMTFVTFLNDYRL
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEHHHHCC
NKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRAMGVAPLKYRKTIYGNN
CHHHEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]