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The map label for this gene is ycnJ [H]

Identifier: 226224668

GI number: 226224668

Start: 2142745

End: 2144370

Strand: Reverse

Name: ycnJ [H]

Synonym: Lm4b_02083

Alternate gene names: 226224668

Gene position: 2144370-2142745 (Counterclockwise)

Preceding gene: 226224671

Following gene: 226224667

Centisome position: 73.62

GC content: 39.48

Gene sequence:

>1626_bases
ATGAAATTATTGAAAAGGGTCAGTTTTTTTCTCATTATACTATATCTATTAATCGTGCCAGTTCAGCATGTTTCTGCACA
TGCTTATTTGGAAAATTCGAATCCGGCCGATCAATCTCATATTCAAACCGCACCCGAAAAAGTAACGCTTGTTTTTAATG
AAGAAATTGAAGCGGATTTCCCTTTAATAGAAGTCAAAGATTCTAGTGGGAAACAAGTGGAAACCGGGAAAACCACTGTT
TCTAAAAAGAATAATCATATGGTTGAAGCATCTCTACCGACTGATTTGAAAGCAGATGTCTATTCTGTTTCATGGCGGGT
TGTGTCAGCGGATGGACATGCGGTTACGGGGATCATTTCTTTTAAGTTAGGCAATACGAAAGCGACGTTCCAAGCAGCGG
AAGTTCCCTCAAGTGGAGCGGACTTGCAAATTAGTTCGATTCAAAAAGCCGTTTTATACATAGGTTTTTCGCTGTTTATC
GGCGTACTTCTTTTTGGATTAGGTCTTTATCCACGAAAAGAACAGATAACAGAAAAAATTTCTGGACGTTTGAAAAAAGT
AACTTGGATAGCGCTAGCACTTCTGGGTGTGGCTCTCTTCATGCAACTTTTCGTACAGACAAGTATCACAACGGGCGTTT
CCATCAGTGAAAGTTTTGGACCGAGTAAGTTAGCTGCTTTCTTGACTACGAAAACAGGGTATATTTGGATCAGTGAATTT
ATCGTATGGCTGCTACTTGCCATTTTTACCATCATGATGTTCTTTAAAAAGAAACAATGGAGCTGGTTCTCGCTTTTGAT
CGAGAGTGCATTAATCGGATATTTGATTTTTGCGAAGGCTCAGAATGGACACGCTGCAGCCAGTGCCGATAAAATAGTAA
GTATCACCGCTGATATGCTTCATATGATTGCGGCAAGCGTTTGGGTTGGCGGGATTTTAGTGCTTTTATTCGTATTACCT
CGGACTGGGAAAGCGCGCGAAGTTTGGAGCCGCTTTGCGATTGTAGCAATCATTGCAGTCGCCTCCATCTTAGTCAGCGG
CCTATTAATGGCAGTGATGAACCTCGGTCAAATGGCCAATTTATTTACAACCAATTACGGTAAAATACTTCTTTTCAAAA
TTGGTTTATTTTTACTAATGGCACTACTAGGGCTAGGTCATTACATTTATATCAAACTCAAAAACCAACGATTGCCATTT
AAAACCATTTTGATGGAACTTATCATTGGGACGATTATCCTTGTTGTCGCAAGTGTGTTAACCAACGTACAAACACCGCC
ACCGCCTGCTCCGAAAGCATTTGATGAAACAATTGCAGCAGAAGGCGAAAAAGCAAAAATCAATTTACGAGTGGAACCAG
CGACCGTTGGACAAAACCAGTTTATCATCACTTTTACTTCAGCAGATGGTTCTGCCAAAACAGATTTTGAACAAGTGACG
ATTACAACAAAATCTACTAAAACAGATGAAAAATCAACTTTCCAAGCCAAACTTGCAAATGATACGCAATACTTTGCGGA
AGGGCTATATATTAATCAAACCGGCAAGTGGGAAATTACGGTTCATGGTTTAACAAAAGATTTCACAGATATAAATCAAA
CATTTACAACCAATATTACACAGTAA

Upstream 100 bases:

>100_bases
GCATCATTTGCAATAGGAAATGAGCCGATTATTTCCATTCAATTGTTGCACATGATAAGTTAAAAAGAGTAAAACCGTTC
GTTCGAAAAAGGAGTAGCAA

Downstream 100 bases:

>100_bases
AGGGGAAAAATAATGAAAAAAATTATCAGCTCCATCGTCGTTTTATTAGCTGTCTTTATCATTCCGTTTCAAGCGAGCGC
ACATGTTTCTGTATTACCGA

Product: copper export protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 541; Mature: 541

Protein sequence:

>541_residues
MKLLKRVSFFLIILYLLIVPVQHVSAHAYLENSNPADQSHIQTAPEKVTLVFNEEIEADFPLIEVKDSSGKQVETGKTTV
SKKNNHMVEASLPTDLKADVYSVSWRVVSADGHAVTGIISFKLGNTKATFQAAEVPSSGADLQISSIQKAVLYIGFSLFI
GVLLFGLGLYPRKEQITEKISGRLKKVTWIALALLGVALFMQLFVQTSITTGVSISESFGPSKLAAFLTTKTGYIWISEF
IVWLLLAIFTIMMFFKKKQWSWFSLLIESALIGYLIFAKAQNGHAAASADKIVSITADMLHMIAASVWVGGILVLLFVLP
RTGKAREVWSRFAIVAIIAVASILVSGLLMAVMNLGQMANLFTTNYGKILLFKIGLFLLMALLGLGHYIYIKLKNQRLPF
KTILMELIIGTIILVVASVLTNVQTPPPPAPKAFDETIAAEGEKAKINLRVEPATVGQNQFIITFTSADGSAKTDFEQVT
ITTKSTKTDEKSTFQAKLANDTQYFAEGLYINQTGKWEITVHGLTKDFTDINQTFTTNITQ

Sequences:

>Translated_541_residues
MKLLKRVSFFLIILYLLIVPVQHVSAHAYLENSNPADQSHIQTAPEKVTLVFNEEIEADFPLIEVKDSSGKQVETGKTTV
SKKNNHMVEASLPTDLKADVYSVSWRVVSADGHAVTGIISFKLGNTKATFQAAEVPSSGADLQISSIQKAVLYIGFSLFI
GVLLFGLGLYPRKEQITEKISGRLKKVTWIALALLGVALFMQLFVQTSITTGVSISESFGPSKLAAFLTTKTGYIWISEF
IVWLLLAIFTIMMFFKKKQWSWFSLLIESALIGYLIFAKAQNGHAAASADKIVSITADMLHMIAASVWVGGILVLLFVLP
RTGKAREVWSRFAIVAIIAVASILVSGLLMAVMNLGQMANLFTTNYGKILLFKIGLFLLMALLGLGHYIYIKLKNQRLPF
KTILMELIIGTIILVVASVLTNVQTPPPPAPKAFDETIAAEGEKAKINLRVEPATVGQNQFIITFTSADGSAKTDFEQVT
ITTKSTKTDEKSTFQAKLANDTQYFAEGLYINQTGKWEITVHGLTKDFTDINQTFTTNITQ
>Mature_541_residues
MKLLKRVSFFLIILYLLIVPVQHVSAHAYLENSNPADQSHIQTAPEKVTLVFNEEIEADFPLIEVKDSSGKQVETGKTTV
SKKNNHMVEASLPTDLKADVYSVSWRVVSADGHAVTGIISFKLGNTKATFQAAEVPSSGADLQISSIQKAVLYIGFSLFI
GVLLFGLGLYPRKEQITEKISGRLKKVTWIALALLGVALFMQLFVQTSITTGVSISESFGPSKLAAFLTTKTGYIWISEF
IVWLLLAIFTIMMFFKKKQWSWFSLLIESALIGYLIFAKAQNGHAAASADKIVSITADMLHMIAASVWVGGILVLLFVLP
RTGKAREVWSRFAIVAIIAVASILVSGLLMAVMNLGQMANLFTTNYGKILLFKIGLFLLMALLGLGHYIYIKLKNQRLPF
KTILMELIIGTIILVVASVLTNVQTPPPPAPKAFDETIAAEGEKAKINLRVEPATVGQNQFIITFTSADGSAKTDFEQVT
ITTKSTKTDEKSTFQAKLANDTQYFAEGLYINQTGKWEITVHGLTKDFTDINQTFTTNITQ

Specific function: Involved in uptake of extracellular oxidized copper under copper-limiting conditions [H]

COG id: COG1276

COG function: function code P; Putative copper export protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the CopD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007348
- InterPro:   IPR008457
- InterPro:   IPR014755
- InterPro:   IPR014756 [H]

Pfam domain/function: PF04234 CopC; PF05425 CopD [H]

EC number: NA

Molecular weight: Translated: 59465; Mature: 59465

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLKRVSFFLIILYLLIVPVQHVSAHAYLENSNPADQSHIQTAPEKVTLVFNEEIEADF
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCC
PLIEVKDSSGKQVETGKTTVSKKNNHMVEASLPTDLKADVYSVSWRVVSADGHAVTGIIS
CEEEEECCCCCEEECCCCEECCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEEEEE
FKLGNTKATFQAAEVPSSGADLQISSIQKAVLYIGFSLFIGVLLFGLGLYPRKEQITEKI
EEECCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
SGRLKKVTWIALALLGVALFMQLFVQTSITTGVSISESFGPSKLAAFLTTKTGYIWISEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCCEEHHHH
IVWLLLAIFTIMMFFKKKQWSWFSLLIESALIGYLIFAKAQNGHAAASADKIVSITADML
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHH
HMIAASVWVGGILVLLFVLPRTGKAREVWSRFAIVAIIAVASILVSGLLMAVMNLGQMAN
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFTTNYGKILLFKIGLFLLMALLGLGHYIYIKLKNQRLPFKTILMELIIGTIILVVASVL
HHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
TNVQTPPPPAPKAFDETIAAEGEKAKINLRVEPATVGQNQFIITFTSADGSAKTDFEQVT
HCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEE
ITTKSTKTDEKSTFQAKLANDTQYFAEGLYINQTGKWEITVHGLTKDFTDINQTFTTNIT
EEECCCCCCCHHHHHHHHCCCHHHHHCCEEEECCCCEEEEEECCCCCHHHCCCHHCCCCC
Q
C
>Mature Secondary Structure
MKLLKRVSFFLIILYLLIVPVQHVSAHAYLENSNPADQSHIQTAPEKVTLVFNEEIEADF
CHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHCCCCEEEEEECCCCCCCC
PLIEVKDSSGKQVETGKTTVSKKNNHMVEASLPTDLKADVYSVSWRVVSADGHAVTGIIS
CEEEEECCCCCEEECCCCEECCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCEEEEEEE
FKLGNTKATFQAAEVPSSGADLQISSIQKAVLYIGFSLFIGVLLFGLGLYPRKEQITEKI
EEECCCCEEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
SGRLKKVTWIALALLGVALFMQLFVQTSITTGVSISESFGPSKLAAFLTTKTGYIWISEF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHCCCCCCEEHHHH
IVWLLLAIFTIMMFFKKKQWSWFSLLIESALIGYLIFAKAQNGHAAASADKIVSITADML
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHH
HMIAASVWVGGILVLLFVLPRTGKAREVWSRFAIVAIIAVASILVSGLLMAVMNLGQMAN
HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFTTNYGKILLFKIGLFLLMALLGLGHYIYIKLKNQRLPFKTILMELIIGTIILVVASVL
HHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
TNVQTPPPPAPKAFDETIAAEGEKAKINLRVEPATVGQNQFIITFTSADGSAKTDFEQVT
HCCCCCCCCCCCHHHHHHHCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCCCCEEEE
ITTKSTKTDEKSTFQAKLANDTQYFAEGLYINQTGKWEITVHGLTKDFTDINQTFTTNIT
EEECCCCCCCHHHHHHHHCCCHHHHHCCEEEECCCCEEEEEECCCCCHHHCCCHHCCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Cu [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]