| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is recS
Identifier: 226224546
GI number: 226224546
Start: 2004721
End: 2006124
Strand: Reverse
Name: recS
Synonym: Lm4b_01960
Alternate gene names: 226224546
Gene position: 2006124-2004721 (Counterclockwise)
Preceding gene: 226224547
Following gene: 226224545
Centisome position: 68.88
GC content: 36.54
Gene sequence:
>1404_bases GTGAACTTAGAAAAGGAATTAAAAGAATATCTTGGTTTTGATGAGTTCCGCCCTGGCCAAAAAGAAGTAATTGAAACAGC TTTAGCAAAGCGAAATTGTTTTGCTATGTTACCTACTGGAACAGGAAAAACCATTTGTTATCAATTAGCGGGTCATTTGA TGGATGGATTAGTATTGATTGTTTCTCCACTTCTCTCCCTTATGCAAGATCAAATGGAGCGAATGCGTGCTCACGGAGAA AAGCGAGTAGCAGCGCTTAATAGCTTTTTAAAACGAGAAGAAAAAGGGCAAGTCCTTGCAAACATTCATTTATATAAATT TATTTTTTTATCACCAGAAATGCTAAATAATGAAACGGTGAAAAACTTACTATTAAAACAAAGAATCAGCTTATTTGTCA TAGATGAAGCGCATTGCATTTCGCAGTGGGGACATGATTTTCGCCCTGATTATTTGATGTTAGGTAAGTTCATTCAAGAA GCCGAATTTCCTGTGACTATGGTGCTGACAGCTACGGCAACCAAGAAAGTTAGAGCAGATATTTTAACGCAATTACATCT AACGGATTGTGTGCAAATTGTTTATTCTGTTAATCGACCGAATATTTCTTTACAAGTGGAGAAATTTTCTAACCAGCATG TAAAAAAAGACCGTTTATATGCGCTTGTTCGCAAACTACAAACACCCGGAATTATTTATTTTTCTAGTAAAAAATTAGCG GAAAGCATTGCGCATGAATTAAGCGAAATTGCTGATTTAAGAGTAGCTTATTATCACGGGGATATGGATACAGAAGATAG AATTATTATTCAGCAACAATTTGTTTACGGGCAGCTGGATGTTATTTGCGCCACTAGCGCATTTGGAATGGGGATAGATA AAGCTGACATTCGCTATGTTATTCATTATCATATGCCTGCAGATTTGGAAGCATATTTGCAAGAAATTGGTCGAGCAGGT CGTGATGGCGAAAACAGTGTGGCGATTCTCTTATACGCGAATGGAGATGAATTCATTCAAATGCAATTAGCCGATCAAGA TATCCCAGATGCCAACTTAATGAATCTGACGAATGAACAACGCAAAACGTTACCTGAAACAGAGCAACGTTTTATTGAAT ACTACCAAAGAAGTGGTTTAAGTACGAAAGAATTAACCGACAAAATGGATTATCGAAAAAAATGGAAGCGGGCTAATTTA CAACAATTTATTGGGTATCTGCATACAACGGATTGTCGCCGTAATTATATTCTACGATACTTTGAAGAAACGCCGTTAGA AGTCACCCCAGAAAACTGTTGTGATTTGGATGGAGCAGAAATAATCGATTTTGAAAAAAGACCAATAACACAGCAAAAAG AAATTCCAACATGGGAAGCTTATTTAGCTTATTTATTGCAATAG
Upstream 100 bases:
>100_bases TTACAAAGAAATGGAATTTACTGCGTGAAATAAAAGCGGAGTTTCCTGATTTGGATTATTATCAAATTCGGTTAGCAGTT GTTAGTAGGGAGGGTAAGCA
Downstream 100 bases:
>100_bases TTTTGCTGTTACGAAATTTGACAAAAACTATATAGTTTCATATTTTTTGTGAAAAAAAGACTTGTTTAAAAGTAAAAAAA TTGTTATTATTTTGTTCAGT
Product: ATP-dependent DNA helicase
Products: NA
Alternate protein names: Recombination protein S [H]
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MNLEKELKEYLGFDEFRPGQKEVIETALAKRNCFAMLPTGTGKTICYQLAGHLMDGLVLIVSPLLSLMQDQMERMRAHGE KRVAALNSFLKREEKGQVLANIHLYKFIFLSPEMLNNETVKNLLLKQRISLFVIDEAHCISQWGHDFRPDYLMLGKFIQE AEFPVTMVLTATATKKVRADILTQLHLTDCVQIVYSVNRPNISLQVEKFSNQHVKKDRLYALVRKLQTPGIIYFSSKKLA ESIAHELSEIADLRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKADIRYVIHYHMPADLEAYLQEIGRAG RDGENSVAILLYANGDEFIQMQLADQDIPDANLMNLTNEQRKTLPETEQRFIEYYQRSGLSTKELTDKMDYRKKWKRANL QQFIGYLHTTDCRRNYILRYFEETPLEVTPENCCDLDGAEIIDFEKRPITQQKEIPTWEAYLAYLLQ
Sequences:
>Translated_467_residues MNLEKELKEYLGFDEFRPGQKEVIETALAKRNCFAMLPTGTGKTICYQLAGHLMDGLVLIVSPLLSLMQDQMERMRAHGE KRVAALNSFLKREEKGQVLANIHLYKFIFLSPEMLNNETVKNLLLKQRISLFVIDEAHCISQWGHDFRPDYLMLGKFIQE AEFPVTMVLTATATKKVRADILTQLHLTDCVQIVYSVNRPNISLQVEKFSNQHVKKDRLYALVRKLQTPGIIYFSSKKLA ESIAHELSEIADLRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKADIRYVIHYHMPADLEAYLQEIGRAG RDGENSVAILLYANGDEFIQMQLADQDIPDANLMNLTNEQRKTLPETEQRFIEYYQRSGLSTKELTDKMDYRKKWKRANL QQFIGYLHTTDCRRNYILRYFEETPLEVTPENCCDLDGAEIIDFEKRPITQQKEIPTWEAYLAYLLQ >Mature_467_residues MNLEKELKEYLGFDEFRPGQKEVIETALAKRNCFAMLPTGTGKTICYQLAGHLMDGLVLIVSPLLSLMQDQMERMRAHGE KRVAALNSFLKREEKGQVLANIHLYKFIFLSPEMLNNETVKNLLLKQRISLFVIDEAHCISQWGHDFRPDYLMLGKFIQE AEFPVTMVLTATATKKVRADILTQLHLTDCVQIVYSVNRPNISLQVEKFSNQHVKKDRLYALVRKLQTPGIIYFSSKKLA ESIAHELSEIADLRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKADIRYVIHYHMPADLEAYLQEIGRAG RDGENSVAILLYANGDEFIQMQLADQDIPDANLMNLTNEQRKTLPETEQRFIEYYQRSGLSTKELTDKMDYRKKWKRANL QQFIGYLHTTDCRRNYILRYFEETPLEVTPENCCDLDGAEIIDFEKRPITQQKEIPTWEAYLAYLLQ
Specific function: Probable DNA helicase. Required in synaptic and/or post- synaptic stages of recombination. Probably has overlapping function with recQ (AC O34748). It probably acts to help generate ss-DNA from ds-DNA breaks [H]
COG id: COG0514
COG function: function code L; Superfamily II DNA helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI51242947, Length=350, Percent_Identity=36.8571428571429, Blast_Score=219, Evalue=5e-57, Organism=Homo sapiens, GI51242943, Length=350, Percent_Identity=36.8571428571429, Blast_Score=219, Evalue=5e-57, Organism=Homo sapiens, GI110735439, Length=445, Percent_Identity=32.5842696629214, Blast_Score=219, Evalue=6e-57, Organism=Homo sapiens, GI148612816, Length=350, Percent_Identity=36.8571428571429, Blast_Score=218, Evalue=8e-57, Organism=Homo sapiens, GI169218196, Length=445, Percent_Identity=32.5842696629214, Blast_Score=218, Evalue=8e-57, Organism=Homo sapiens, GI14591902, Length=346, Percent_Identity=36.4161849710983, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI14591904, Length=346, Percent_Identity=36.4161849710983, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI4557365, Length=343, Percent_Identity=38.1924198250729, Blast_Score=211, Evalue=1e-54, Organism=Homo sapiens, GI284005309, Length=366, Percent_Identity=32.7868852459016, Blast_Score=173, Evalue=3e-43, Organism=Homo sapiens, GI41327771, Length=377, Percent_Identity=23.8726790450928, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI222352149, Length=370, Percent_Identity=22.1621621621622, Blast_Score=82, Evalue=1e-15, Organism=Homo sapiens, GI7661920, Length=338, Percent_Identity=23.3727810650888, Blast_Score=80, Evalue=4e-15, Organism=Homo sapiens, GI188035877, Length=359, Percent_Identity=23.3983286908078, Blast_Score=79, Evalue=1e-14, Organism=Homo sapiens, GI262118318, Length=372, Percent_Identity=25.2688172043011, Blast_Score=77, Evalue=5e-14, Organism=Homo sapiens, GI216548263, Length=348, Percent_Identity=25.2873563218391, Blast_Score=75, Evalue=1e-13, Organism=Homo sapiens, GI262231852, Length=348, Percent_Identity=25.2873563218391, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI13518015, Length=348, Percent_Identity=25.2873563218391, Blast_Score=75, Evalue=2e-13, Organism=Homo sapiens, GI45446747, Length=345, Percent_Identity=25.2173913043478, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI45446743, Length=345, Percent_Identity=25.2173913043478, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI164664518, Length=368, Percent_Identity=23.3695652173913, Blast_Score=69, Evalue=9e-12, Organism=Homo sapiens, GI21071032, Length=195, Percent_Identity=28.2051282051282, Blast_Score=69, Evalue=1e-11, Organism=Escherichia coli, GI48994977, Length=346, Percent_Identity=39.8843930635838, Blast_Score=247, Evalue=9e-67, Organism=Escherichia coli, GI87082221, Length=371, Percent_Identity=25.6064690026954, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1790214, Length=250, Percent_Identity=26.8, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787016, Length=352, Percent_Identity=22.4431818181818, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI32564293, Length=363, Percent_Identity=36.3636363636364, Blast_Score=226, Evalue=3e-59, Organism=Caenorhabditis elegans, GI25145561, Length=345, Percent_Identity=36.8115942028986, Blast_Score=222, Evalue=3e-58, Organism=Caenorhabditis elegans, GI71987997, Length=369, Percent_Identity=35.230352303523, Blast_Score=211, Evalue=9e-55, Organism=Caenorhabditis elegans, GI71987993, Length=369, Percent_Identity=35.230352303523, Blast_Score=210, Evalue=1e-54, Organism=Caenorhabditis elegans, GI17552866, Length=430, Percent_Identity=30.9302325581395, Blast_Score=191, Evalue=7e-49, Organism=Caenorhabditis elegans, GI71987143, Length=360, Percent_Identity=25.2777777777778, Blast_Score=90, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17537549, Length=381, Percent_Identity=23.0971128608924, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71995724, Length=331, Percent_Identity=23.5649546827795, Blast_Score=79, Evalue=7e-15, Organism=Caenorhabditis elegans, GI17507121, Length=331, Percent_Identity=23.2628398791541, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI32565321, Length=378, Percent_Identity=23.015873015873, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17552642, Length=350, Percent_Identity=26, Blast_Score=72, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17507945, Length=383, Percent_Identity=23.2375979112272, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI115533224, Length=365, Percent_Identity=22.1917808219178, Blast_Score=68, Evalue=9e-12, Organism=Saccharomyces cerevisiae, GI6323844, Length=474, Percent_Identity=32.4894514767932, Blast_Score=232, Evalue=8e-62, Organism=Saccharomyces cerevisiae, GI6324217, Length=366, Percent_Identity=28.6885245901639, Blast_Score=93, Evalue=9e-20, Organism=Saccharomyces cerevisiae, GI6320224, Length=366, Percent_Identity=25.9562841530055, Blast_Score=80, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6320041, Length=338, Percent_Identity=22.7810650887574, Blast_Score=72, Evalue=2e-13, Organism=Saccharomyces cerevisiae, GI6320449, Length=245, Percent_Identity=24.4897959183673, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6324620, Length=345, Percent_Identity=24.9275362318841, Blast_Score=63, Evalue=1e-10, Organism=Drosophila melanogaster, GI24646066, Length=440, Percent_Identity=35.2272727272727, Blast_Score=245, Evalue=4e-65, Organism=Drosophila melanogaster, GI24664226, Length=358, Percent_Identity=32.9608938547486, Blast_Score=194, Evalue=2e-49, Organism=Drosophila melanogaster, GI62472181, Length=362, Percent_Identity=32.5966850828729, Blast_Score=192, Evalue=5e-49, Organism=Drosophila melanogaster, GI24664230, Length=362, Percent_Identity=32.5966850828729, Blast_Score=192, Evalue=6e-49, Organism=Drosophila melanogaster, GI21358123, Length=353, Percent_Identity=35.1274787535411, Blast_Score=174, Evalue=1e-43, Organism=Drosophila melanogaster, GI24662330, Length=365, Percent_Identity=29.041095890411, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI24645031, Length=352, Percent_Identity=25.5681818181818, Blast_Score=86, Evalue=6e-17, Organism=Drosophila melanogaster, GI24584994, Length=368, Percent_Identity=24.7282608695652, Blast_Score=82, Evalue=7e-16, Organism=Drosophila melanogaster, GI21355075, Length=374, Percent_Identity=23.7967914438503, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI28574962, Length=374, Percent_Identity=25.4010695187166, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24666101, Length=343, Percent_Identity=26.8221574344023, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI24582080, Length=364, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24582078, Length=364, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI17136248, Length=364, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24582075, Length=364, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI17977678, Length=349, Percent_Identity=23.7822349570201, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24584399, Length=351, Percent_Identity=23.0769230769231, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24644479, Length=331, Percent_Identity=22.3564954682779, Blast_Score=69, Evalue=8e-12, Organism=Drosophila melanogaster, GI281361218, Length=331, Percent_Identity=22.3564954682779, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24644481, Length=331, Percent_Identity=22.3564954682779, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24644483, Length=331, Percent_Identity=22.3564954682779, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24644487, Length=331, Percent_Identity=22.3564954682779, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI45551833, Length=331, Percent_Identity=22.3564954682779, Blast_Score=68, Evalue=1e-11, Organism=Drosophila melanogaster, GI24644485, Length=331, Percent_Identity=22.3564954682779, Blast_Score=68, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR002464 - InterPro: IPR004589 - InterPro: IPR001650 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 54083; Mature: 54083
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: PS00690 DEAH_ATP_HELICASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLEKELKEYLGFDEFRPGQKEVIETALAKRNCFAMLPTGTGKTICYQLAGHLMDGLVLI CCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH VSPLLSLMQDQMERMRAHGEKRVAALNSFLKREEKGQVLANIHLYKFIFLSPEMLNNETV HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHEEECHHHHCHHHH KNLLLKQRISLFVIDEAHCISQWGHDFRPDYLMLGKFIQEAEFPVTMVLTATATKKVRAD HHHHHHHHCCEEEEECHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHHH ILTQLHLTDCVQIVYSVNRPNISLQVEKFSNQHVKKDRLYALVRKLQTPGIIYFSSKKLA HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCHHHH ESIAHELSEIADLRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKADIRYV HHHHHHHHHHHHHEEEEEECCCCCCCCEEEEEHHHHCCHHHEEEHHHHCCCCCCCCEEEE IHYHMPADLEAYLQEIGRAGRDGENSVAILLYANGDEFIQMQLADQDIPDANLMNLTNEQ EEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCHHHHCCCHH RKTLPETEQRFIEYYQRSGLSTKELTDKMDYRKKWKRANLQQFIGYLHTTDCRRNYILRY HHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH FEETPLEVTPENCCDLDGAEIIDFEKRPITQQKEIPTWEAYLAYLLQ HHCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCC >Mature Secondary Structure MNLEKELKEYLGFDEFRPGQKEVIETALAKRNCFAMLPTGTGKTICYQLAGHLMDGLVLI CCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHH VSPLLSLMQDQMERMRAHGEKRVAALNSFLKREEKGQVLANIHLYKFIFLSPEMLNNETV HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHEEECHHHHCHHHH KNLLLKQRISLFVIDEAHCISQWGHDFRPDYLMLGKFIQEAEFPVTMVLTATATKKVRAD HHHHHHHHCCEEEEECHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHHHHH ILTQLHLTDCVQIVYSVNRPNISLQVEKFSNQHVKKDRLYALVRKLQTPGIIYFSSKKLA HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCHHHH ESIAHELSEIADLRVAYYHGDMDTEDRIIIQQQFVYGQLDVICATSAFGMGIDKADIRYV HHHHHHHHHHHHHEEEEEECCCCCCCCEEEEEHHHHCCHHHEEEHHHHCCCCCCCCEEEE IHYHMPADLEAYLQEIGRAGRDGENSVAILLYANGDEFIQMQLADQDIPDANLMNLTNEQ EEECCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCHHHHCCCHH RKTLPETEQRFIEYYQRSGLSTKELTDKMDYRKKWKRANLQQFIGYLHTTDCRRNYILRY HHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHH FEETPLEVTPENCCDLDGAEIIDFEKRPITQQKEIPTWEAYLAYLLQ HHCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377; 9642195 [H]