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The map label for this gene is ypbB [H]

Identifier: 226224547

GI number: 226224547

Start: 2006121

End: 2007128

Strand: Reverse

Name: ypbB [H]

Synonym: Lm4b_01961

Alternate gene names: 226224547

Gene position: 2007128-2006121 (Counterclockwise)

Preceding gene: 226224549

Following gene: 226224546

Centisome position: 68.91

GC content: 36.9

Gene sequence:

>1008_bases
TTGGATAAGCTAGATAACTATATTATGACAATTTTAGAAAAAAGTATCACACCTAGAAAATTACCATTTTTACATACTGT
TTTAGCTGGAAGAAGAACTGGACAAGCTGTTCAAGATATCCATCTTTTTCAAATGCAACATTTATTTGGACTAGTGCCAA
ATTTAAAAGCAAGCTATTTAGAAAAACGAATTTCGGAATTAGTGCACCAAGGTAGCATTCTTTCTACTGAAAATGGTTAT
GTGACACAAGGGCAACTAGTAGCTATGTTTGAAAATGATTACCCAAACTTCCAAGGTTTTACATTTCAAGGGCAAGCTTT
TGCTTTTTTTGCCCATTTGCGACTCGCAGTTCAAGTTGTTAGTAACATTCATCATCATGAAAGCTATTATTTACCAGTTA
TTCGTGATAAGAAAGTCCAACAATTTATTAAGCATTGGTTGAAGCACCGAGATAAATCTAATTTAGCGAATCAGTTATAC
GGTGAACTCGTTGCATGGATGAATAAATTAGCAGTTGCTCGACCAGCGTTTTTAGTGGAACGTTTTTCTGGGGGCGAATT
AATGGGCTATACTACAGAACAAATTGCCTCAAAATATCAAGTGGAGAAGTGGGACGTTTATTTTGAGGTGCTCCATGAGG
TTCACCGTTTGCTTATAGCGATGAAAAAAACCCCCGAAGAATGGCCGATTCTAGCTAGTCTTGTACCGGATGAGCTCAAT
GGGTTAACTAGTTCTGCCATGCAAACCTATGTATTATGGCAAAATGGAGCTGATTTAGAAGCAATCGAGCGAATTCGGAA
TTTGAAAAAGAGTACCATCCATGATCACTTTGTAGAAATCCGAGCTACTTTGAAAGAAGCGAATGTTCCTTATTTACCAG
AAGAGACAATCATCCAAACGATTATTACAAAGAAATGGAATTTACTGCGTGAAATAAAAGCGGAGTTTCCTGATTTGGAT
TATTATCAAATTCGGTTAGCAGTTGTTAGTAGGGAGGGTAAGCAGTGA

Upstream 100 bases:

>100_bases
TATTGTACCATATTTTGAAAAAGTTTTTTTCGGAAAAATTAATGTAGAACAAGTGTTTCTGTGTTATGATTATGGTACAA
AAAAAGGTGGTGGACATGTC

Downstream 100 bases:

>100_bases
ACTTAGAAAAGGAATTAAAAGAATATCTTGGTTTTGATGAGTTCCGCCCTGGCCAAAAAGAAGTAATTGAAACAGCTTTA
GCAAAGCGAAATTGTTTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MDKLDNYIMTILEKSITPRKLPFLHTVLAGRRTGQAVQDIHLFQMQHLFGLVPNLKASYLEKRISELVHQGSILSTENGY
VTQGQLVAMFENDYPNFQGFTFQGQAFAFFAHLRLAVQVVSNIHHHESYYLPVIRDKKVQQFIKHWLKHRDKSNLANQLY
GELVAWMNKLAVARPAFLVERFSGGELMGYTTEQIASKYQVEKWDVYFEVLHEVHRLLIAMKKTPEEWPILASLVPDELN
GLTSSAMQTYVLWQNGADLEAIERIRNLKKSTIHDHFVEIRATLKEANVPYLPEETIIQTIITKKWNLLREIKAEFPDLD
YYQIRLAVVSREGKQ

Sequences:

>Translated_335_residues
MDKLDNYIMTILEKSITPRKLPFLHTVLAGRRTGQAVQDIHLFQMQHLFGLVPNLKASYLEKRISELVHQGSILSTENGY
VTQGQLVAMFENDYPNFQGFTFQGQAFAFFAHLRLAVQVVSNIHHHESYYLPVIRDKKVQQFIKHWLKHRDKSNLANQLY
GELVAWMNKLAVARPAFLVERFSGGELMGYTTEQIASKYQVEKWDVYFEVLHEVHRLLIAMKKTPEEWPILASLVPDELN
GLTSSAMQTYVLWQNGADLEAIERIRNLKKSTIHDHFVEIRATLKEANVPYLPEETIIQTIITKKWNLLREIKAEFPDLD
YYQIRLAVVSREGKQ
>Mature_335_residues
MDKLDNYIMTILEKSITPRKLPFLHTVLAGRRTGQAVQDIHLFQMQHLFGLVPNLKASYLEKRISELVHQGSILSTENGY
VTQGQLVAMFENDYPNFQGFTFQGQAFAFFAHLRLAVQVVSNIHHHESYYLPVIRDKKVQQFIKHWLKHRDKSNLANQLY
GELVAWMNKLAVARPAFLVERFSGGELMGYTTEQIASKYQVEKWDVYFEVLHEVHRLLIAMKKTPEEWPILASLVPDELN
GLTSSAMQTYVLWQNGADLEAIERIRNLKKSTIHDHFVEIRATLKEANVPYLPEETIIQTIITKKWNLLREIKAEFPDLD
YYQIRLAVVSREGKQ

Specific function: Unknown

COG id: COG4955

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008308 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38923; Mature: 38923

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLDNYIMTILEKSITPRKLPFLHTVLAGRRTGQAVQDIHLFQMQHLFGLVPNLKASYL
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
EKRISELVHQGSILSTENGYVTQGQLVAMFENDYPNFQGFTFQGQAFAFFAHLRLAVQVV
HHHHHHHHHCCCEEECCCCEEECCEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHH
SNIHHHESYYLPVIRDKKVQQFIKHWLKHRDKSNLANQLYGELVAWMNKLAVARPAFLVE
HHHHHCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFSGGELMGYTTEQIASKYQVEKWDVYFEVLHEVHRLLIAMKKTPEEWPILASLVPDELN
HCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHH
GLTSSAMQTYVLWQNGADLEAIERIRNLKKSTIHDHFVEIRATLKEANVPYLPEETIIQT
HHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IITKKWNLLREIKAEFPDLDYYQIRLAVVSREGKQ
HHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCC
>Mature Secondary Structure
MDKLDNYIMTILEKSITPRKLPFLHTVLAGRRTGQAVQDIHLFQMQHLFGLVPNLKASYL
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
EKRISELVHQGSILSTENGYVTQGQLVAMFENDYPNFQGFTFQGQAFAFFAHLRLAVQVV
HHHHHHHHHCCCEEECCCCEEECCEEEEEEECCCCCCCCEEECCHHHHHHHHHHHHHHHH
SNIHHHESYYLPVIRDKKVQQFIKHWLKHRDKSNLANQLYGELVAWMNKLAVARPAFLVE
HHHHHCCCEEECCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFSGGELMGYTTEQIASKYQVEKWDVYFEVLHEVHRLLIAMKKTPEEWPILASLVPDELN
HCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHH
GLTSSAMQTYVLWQNGADLEAIERIRNLKKSTIHDHFVEIRATLKEANVPYLPEETIIQT
HHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
IITKKWNLLREIKAEFPDLDYYQIRLAVVSREGKQ
HHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]