Click here to switch to the map view.

The map label for this gene is ytfP [H]

Identifier: 226224522

GI number: 226224522

Start: 1981238

End: 1982503

Strand: Reverse

Name: ytfP [H]

Synonym: Lm4b_01935

Alternate gene names: 226224522

Gene position: 1982503-1981238 (Counterclockwise)

Preceding gene: 226224523

Following gene: 226224514

Centisome position: 68.06

GC content: 40.84

Gene sequence:

>1266_bases
ATGGATTATGATGTAATTGTTATTGGTGGCGGGCCATCTGGACTTATGGCGGCTATCAGTGCAGCAGAGAAAAATAAACG
AGTACTATTAATTGAAAAAGGACCAAAATTGGGACGTAAATTAATTATGTCTGGTGGCGGACGTTGTAATGTAACGAACA
GGCGACCAGCAGAAGAAATTATTAAACATATTCCTGGTAATGGTCGCTTTTTATATAGTGCGTTTCATGCCTTTGATAAT
GAAGATATTATTCGCTTTTTTGAAAGACTTGGCGTGGCGTTAAAAGAAGAAGACCACGGTAGAATGTTTCCTGTATCGAA
TAGCGCGCGTTCTGTCGCTGAGGCAATGATTCAGCGGATGGAAAAACTAGGCGTAAAAATTTACATGCAAACAGCCGTGA
AACAAGTGGATTATGAGGATGGACATGTGAAAGGGGTGACGCTGAAAGACGGCCAAGAAATTTCAGCGAGTGCGGTCATT
GTTGCAGTTGGCGGTAAATCTGTTCCACGGACTGGTTCGACCGGAGATGGCTATGCTTGGGCGAAAAAAGCAGGACATAC
CATCACAGAACTTTATCCGACAGAAGTGCCAATTACGTCTAGTGAGCCTTTTATTAAACAAAAAGTGTTACAAGGAACGT
CGCTTCGTGATGTGTCCCTTTCTGTTTTAAATGCAAAAGGGAAGCCGATTATTACGCATCAAATGGATATGATTTTCACG
CATTTTGGTGTGTCAGGACCAGCGGCTCTTCGTTGTAGTATGTTCGTCCTTCGAGAATTAAAGAAAACAGGCGCTAGCAC
GGTGAAGATGCGTCTTGATTTATTCCCGAATGTATCCGCTGCGGAACTTTCGAAAGATGTGTATAAATTGTTAGAAGAGA
ATCCGAAGAAAGCCTTGAAAAATTCGTTAAGTTCGCTTTTACAAGAGAAAATGTTATTGTTTTTACTTGAAAAAGCAGAC
TTAGATGAAACGGCTGATTATAAACAAGTAAGCCCGAAAAAAATCGAGCAGTTTATTCAGTTATTAAAAGATTTCACTTT
TGAAGTGAATGGCACGCTTGATTTTGAAAAAGCGTTTGTGACAGGTGGTGGGGTTTCTGTAAAGGAAATTAAACCAAAAG
AGATGCAATCGAAGTTGATGGAAGGATTATTTTTCTGCGGGGAAATACTAGATATTAATGGTTATACGGGTGGATATAAT
ATTACTTGTGCGCTAGTGACTGGGCACACGGCAGGAGCTTATGCGGCGGAAGTTTCGAACGCATAA

Upstream 100 bases:

>100_bases
ACCTGAGATTTTTCTTGGGTTTTTTGTTTGGTGAAAAAAGCTTGGCACTGAGCCGAATGCTTGCTATACTTAAACACGGA
TAAAGTAAAGGAGCGGGACA

Downstream 100 bases:

>100_bases
AAAAAGAACCAAATCTGTTATTCGCAGATTTGGTTCTTTTTTTCTTATTAACCGATTAATTTTTCGTGGAACATTCTTTG
GCAAAGTTCCATTTTTTGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEIIKHIPGNGRFLYSAFHAFDN
EDIIRFFERLGVALKEEDHGRMFPVSNSARSVAEAMIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVI
VAVGGKSVPRTGSTGDGYAWAKKAGHTITELYPTEVPITSSEPFIKQKVLQGTSLRDVSLSVLNAKGKPIITHQMDMIFT
HFGVSGPAALRCSMFVLRELKKTGASTVKMRLDLFPNVSAAELSKDVYKLLEENPKKALKNSLSSLLQEKMLLFLLEKAD
LDETADYKQVSPKKIEQFIQLLKDFTFEVNGTLDFEKAFVTGGGVSVKEIKPKEMQSKLMEGLFFCGEILDINGYTGGYN
ITCALVTGHTAGAYAAEVSNA

Sequences:

>Translated_421_residues
MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEIIKHIPGNGRFLYSAFHAFDN
EDIIRFFERLGVALKEEDHGRMFPVSNSARSVAEAMIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVI
VAVGGKSVPRTGSTGDGYAWAKKAGHTITELYPTEVPITSSEPFIKQKVLQGTSLRDVSLSVLNAKGKPIITHQMDMIFT
HFGVSGPAALRCSMFVLRELKKTGASTVKMRLDLFPNVSAAELSKDVYKLLEENPKKALKNSLSSLLQEKMLLFLLEKAD
LDETADYKQVSPKKIEQFIQLLKDFTFEVNGTLDFEKAFVTGGGVSVKEIKPKEMQSKLMEGLFFCGEILDINGYTGGYN
ITCALVTGHTAGAYAAEVSNA
>Mature_421_residues
MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEIIKHIPGNGRFLYSAFHAFDN
EDIIRFFERLGVALKEEDHGRMFPVSNSARSVAEAMIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVI
VAVGGKSVPRTGSTGDGYAWAKKAGHTITELYPTEVPITSSEPFIKQKVLQGTSLRDVSLSVLNAKGKPIITHQMDMIFT
HFGVSGPAALRCSMFVLRELKKTGASTVKMRLDLFPNVSAAELSKDVYKLLEENPKKALKNSLSSLLQEKMLLFLLEKAD
LDETADYKQVSPKKIEQFIQLLKDFTFEVNGTLDFEKAFVTGGGVSVKEIKPKEMQSKLMEGLFFCGEILDINGYTGGYN
ITCALVTGHTAGAYAAEVSNA

Specific function: Unknown

COG id: COG2081

COG function: function code R; Predicted flavoproteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI2367234, Length=390, Percent_Identity=30, Blast_Score=167, Evalue=9e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004792
- InterPro:   IPR013027 [H]

Pfam domain/function: PF03486 HI0933_like [H]

EC number: NA

Molecular weight: Translated: 45996; Mature: 45996

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEI
CCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEECCCCCCHHHH
IKHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAEAMIQRM
HHHCCCCCEEEEEHHHHCCCHHHHHHHHHHCCEEEECCCCCEECCCCHHHHHHHHHHHHH
EKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVGGKSVPRTGSTGDGYAW
HHCCCEEEEHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHH
AKKAGHTITELYPTEVPITSSEPFIKQKVLQGTSLRDVSLSVLNAKGKPIITHQMDMIFT
HHHCCCEEHEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCEEEEHHHHHHHH
HFGVSGPAALRCSMFVLRELKKTGASTVKMRLDLFPNVSAAELSKDVYKLLEENPKKALK
HCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHH
NSLSSLLQEKMLLFLLEKADLDETADYKQVSPKKIEQFIQLLKDFTFEVNGTLDFEKAFV
HHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCEEECCEEEEHHEEE
TGGGVSVKEIKPKEMQSKLMEGLFFCGEILDINGYTGGYNITCALVTGHTAGAYAAEVSN
ECCCEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEEEECCCCCCCHHCCCC
A
C
>Mature Secondary Structure
MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMSGGGRCNVTNRRPAEEI
CCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEECCCCCCHHHH
IKHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRMFPVSNSARSVAEAMIQRM
HHHCCCCCEEEEEHHHHCCCHHHHHHHHHHCCEEEECCCCCEECCCCHHHHHHHHHHHHH
EKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVIVAVGGKSVPRTGSTGDGYAW
HHCCCEEEEHHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCCHH
AKKAGHTITELYPTEVPITSSEPFIKQKVLQGTSLRDVSLSVLNAKGKPIITHQMDMIFT
HHHCCCEEHEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCEEEEHHHHHHHH
HFGVSGPAALRCSMFVLRELKKTGASTVKMRLDLFPNVSAAELSKDVYKLLEENPKKALK
HCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCHHHHHH
NSLSSLLQEKMLLFLLEKADLDETADYKQVSPKKIEQFIQLLKDFTFEVNGTLDFEKAFV
HHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHHCCEEECCEEEEHHEEE
TGGGVSVKEIKPKEMQSKLMEGLFFCGEILDINGYTGGYNITCALVTGHTAGAYAAEVSN
ECCCEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEEEECCCCCCCHHCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]