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The map label for this gene is chiD [H]

Identifier: 226224486

GI number: 226224486

Start: 1943463

End: 1944521

Strand: Reverse

Name: chiD [H]

Synonym: Lm4b_01899

Alternate gene names: 226224486

Gene position: 1944521-1943463 (Counterclockwise)

Preceding gene: 226224487

Following gene: 226224485

Centisome position: 66.76

GC content: 41.45

Gene sequence:

>1059_bases
ATGAATGGAAAACAAGTAATGGTTGGTGGTTTGTCTTTACTTTTAGTTGGTGCAGGACTGGGGGCATTTGGTAGTCAAGC
ACAAGCGGCGACGGATGACGCTTCTGTAATGCCAGATATTTCTAACAAACAGGTGCTAGTTGGGTACTGGCATAGTTGGA
AATCTTCCGGAAATGATGGCTATCAACAAGGGACTTCGGCTGATATCGCCCTAAAAGATACACCGAAAGCTTATAACGTG
GTAGATGTTTCCTTTATGAAAGGGGACGGGGTAAATCGTATTCCGACATTTAAACCAGTGGGAATAAATGATAGCGATTT
CAGAGCACAAGTCGGCGCATTAAATAAAGAAGGTCGGGCCGTTCTTTTGGCACTAGGTGGAGCAGATGGACACGTGGAAC
TAAAAGCTGGGGATGAAGAGGCGTTCGCGAATGAAATTATCCGCCAAGTAGAAACATATGGCTTTGATGGATTAGACATC
GACTTAGAACAAAGTGCGATTACCGCGGGAGATAATAAAACGGTTATCCCAGCAGCGCTAAAAATCGTTAAAGATCATTA
TAAAGCGGAAGGGAAAAATTTCCTAATTACGATGGCACCAGAATTTCCTTATTTAAAACCAGGTAGTGCCTATGAAAGCT
ACCTAACCTCACTTGCTAATTATTATGACTATATTGCGCCACAACTATACAATCAAGGTGGCGATGGTGTTTGGGTTGAT
GAAACAAACCAATGGATTGCGCAAAATAATGATACATTAAAAGAATCTTTCTTATATTATATGGCGGACTCCTTTATTAA
TGGGACTCGTGGTTACTTGAAAATCCCAGCTAATAAATTCGTGTTCGGTTTACCAGCCAATGTGGATGCAGCCGCAACTG
GTTATGTAAAAGATCCGCAAATCGTCAAAAATGTTTTCACTCGTTTACAAGCAAAAGGCACACCAGTGAAAGGGATTATG
ACTTGGTCGGTGAACTGGGATGCAGGTAAAAATAAAGCAGGAGTGCCTTATAATAATGGTTTCTCTAACGCGTATGGTCC
GATAGTTGGAACTAAATAA

Upstream 100 bases:

>100_bases
TTTTTTGCTGTTTTTCTAGTTTTATTTTCATTATGATGGGTATTTTCTAGTAGCTCCAAAAAAGCAAGCTTGGGGTAGAT
AAAGTAAGGGGGAAAAGTAG

Downstream 100 bases:

>100_bases
TAGGACAACCGATATTCAGTTTAACTGGATATCGGTTTTTTTAAAACAGAAGACTTGCTTTCCTAATTAAATCGGCGTAT
GATATAAATCGTAATGATTA

Product: chitinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MNGKQVMVGGLSLLLVGAGLGAFGSQAQAATDDASVMPDISNKQVLVGYWHSWKSSGNDGYQQGTSADIALKDTPKAYNV
VDVSFMKGDGVNRIPTFKPVGINDSDFRAQVGALNKEGRAVLLALGGADGHVELKAGDEEAFANEIIRQVETYGFDGLDI
DLEQSAITAGDNKTVIPAALKIVKDHYKAEGKNFLITMAPEFPYLKPGSAYESYLTSLANYYDYIAPQLYNQGGDGVWVD
ETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIPANKFVFGLPANVDAAATGYVKDPQIVKNVFTRLQAKGTPVKGIM
TWSVNWDAGKNKAGVPYNNGFSNAYGPIVGTK

Sequences:

>Translated_352_residues
MNGKQVMVGGLSLLLVGAGLGAFGSQAQAATDDASVMPDISNKQVLVGYWHSWKSSGNDGYQQGTSADIALKDTPKAYNV
VDVSFMKGDGVNRIPTFKPVGINDSDFRAQVGALNKEGRAVLLALGGADGHVELKAGDEEAFANEIIRQVETYGFDGLDI
DLEQSAITAGDNKTVIPAALKIVKDHYKAEGKNFLITMAPEFPYLKPGSAYESYLTSLANYYDYIAPQLYNQGGDGVWVD
ETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIPANKFVFGLPANVDAAATGYVKDPQIVKNVFTRLQAKGTPVKGIM
TWSVNWDAGKNKAGVPYNNGFSNAYGPIVGTK
>Mature_352_residues
MNGKQVMVGGLSLLLVGAGLGAFGSQAQAATDDASVMPDISNKQVLVGYWHSWKSSGNDGYQQGTSADIALKDTPKAYNV
VDVSFMKGDGVNRIPTFKPVGINDSDFRAQVGALNKEGRAVLLALGGADGHVELKAGDEEAFANEIIRQVETYGFDGLDI
DLEQSAITAGDNKTVIPAALKIVKDHYKAEGKNFLITMAPEFPYLKPGSAYESYLTSLANYYDYIAPQLYNQGGDGVWVD
ETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIPANKFVFGLPANVDAAATGYVKDPQIVKNVFTRLQAKGTPVKGIM
TWSVNWDAGKNKAGVPYNNGFSNAYGPIVGTK

Specific function: Unknown

COG id: COG3469

COG function: function code G; Chitinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 fibronectin type-III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003610
- InterPro:   IPR008957
- InterPro:   IPR003961
- InterPro:   IPR001223
- InterPro:   IPR001579
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR015520 [H]

Pfam domain/function: PF02839 CBM_5_12; PF00041 fn3; PF00704 Glyco_hydro_18 [H]

EC number: =3.2.1.14 [H]

Molecular weight: Translated: 37931; Mature: 37931

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS01095 CHITINASE_18

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKQVMVGGLSLLLVGAGLGAFGSQAQAATDDASVMPDISNKQVLVGYWHSWKSSGNDG
CCCCEEEECHHEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
YQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVGINDSDFRAQVGALNKEGRA
CCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCEECCCCCCHHHHHHHCCCCCCCCE
VLLALGGADGHVELKAGDEEAFANEIIRQVETYGFDGLDIDLEQSAITAGDNKTVIPAAL
EEEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCCEEHHHHH
KIVKDHYKAEGKNFLITMAPEFPYLKPGSAYESYLTSLANYYDYIAPQLYNQGGDGVWVD
HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
ETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIPANKFVFGLPANVDAAATGYVKDPQ
CCCCEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCHH
IVKNVFTRLQAKGTPVKGIMTWSVNWDAGKNKAGVPYNNGFSNAYGPIVGTK
HHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNGKQVMVGGLSLLLVGAGLGAFGSQAQAATDDASVMPDISNKQVLVGYWHSWKSSGNDG
CCCCEEEECHHEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
YQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVGINDSDFRAQVGALNKEGRA
CCCCCCCEEEECCCCCCCEEEEEEEECCCCCCCCCCEECCCCCCHHHHHHHCCCCCCCCE
VLLALGGADGHVELKAGDEEAFANEIIRQVETYGFDGLDIDLEQSAITAGDNKTVIPAAL
EEEEECCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEECCCEEECCCCCEEHHHHH
KIVKDHYKAEGKNFLITMAPEFPYLKPGSAYESYLTSLANYYDYIAPQLYNQGGDGVWVD
HHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
ETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIPANKFVFGLPANVDAAATGYVKDPQ
CCCCEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCHH
IVKNVFTRLQAKGTPVKGIMTWSVNWDAGKNKAGVPYNNGFSNAYGPIVGTK
HHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1729234 [H]