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The map label for this gene is 226224399

Identifier: 226224399

GI number: 226224399

Start: 1853619

End: 1853849

Strand: Reverse

Name: 226224399

Synonym: Lm4b_01812

Alternate gene names: NA

Gene position: 1853849-1853619 (Counterclockwise)

Preceding gene: 226224400

Following gene: 226224398

Centisome position: 63.65

GC content: 42.86

Gene sequence:

>231_bases
ATGGAAGAACTCATTCTCTCAATCGTGAAACCTCTTGTTGACCACCCGGAAGACGTTGTTATCACGCCAGAAGAAACGGA
TACATCGTTAACCTACAAATTGTCTGTCAGTAAAGAAGACATGGGACGCGTGATTGGTAAGCAAGGTCGTATTGCGAAAG
CGATTCGTACGCTTGTCTACGCAGTTGGCTCCAAAAACGATAAGAAGATTCGTCTTGAAATTATCGAATAA

Upstream 100 bases:

>100_bases
GCGAAACCATCTGATACAGTTCGCAATCTTCTTAGCCGCGAAGGTATCATGGAAAAATTCCATAACCAAAAATTAGGTAA
ATAAGGAGGTCTCGGCGCGA

Downstream 100 bases:

>100_bases
CAAAAACTCGTCAATTTGGCGAGTTTTTTTATAACTATTTTTAAATAATCATCAGAGAAGCAATTACCTCACTAAATGTT
GTAAAATAGAATAGAAATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 76; Mature: 76

Protein sequence:

>76_residues
MEELILSIVKPLVDHPEDVVITPEETDTSLTYKLSVSKEDMGRVIGKQGRIAKAIRTLVYAVGSKNDKKIRLEIIE

Sequences:

>Translated_76_residues
MEELILSIVKPLVDHPEDVVITPEETDTSLTYKLSVSKEDMGRVIGKQGRIAKAIRTLVYAVGSKNDKKIRLEIIE
>Mature_76_residues
MEELILSIVKPLVDHPEDVVITPEETDTSLTYKLSVSKEDMGRVIGKQGRIAKAIRTLVYAVGSKNDKKIRLEIIE

Specific function: Unknown

COG id: COG1837

COG function: function code R; Predicted RNA-binding protein (contains KH domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 KH domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1796_LISMO (P67234)

Other databases:

- EMBL:   AL591981
- PIR:   AD1299
- RefSeq:   NP_465321.1
- GeneID:   985933
- GenomeReviews:   AL591824_GR
- KEGG:   lmo:lmo1796
- GenoList:   LMO1796
- HOGENOM:   HBG668070
- OMA:   HETERFM
- ProtClustDB:   CLSK564615
- BioCyc:   LMON169963:LMO1796-MONOMER
- HAMAP:   MF_00088
- InterPro:   IPR004088
- InterPro:   IPR020627

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 8522; Mature: 8522

Theoretical pI: Translated: 5.87; Mature: 5.87

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEELILSIVKPLVDHPEDVVITPEETDTSLTYKLSVSKEDMGRVIGKQGRIAKAIRTLVY
CHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHH
AVGSKNDKKIRLEIIE
HHCCCCCCEEEEEEEC
>Mature Secondary Structure
MEELILSIVKPLVDHPEDVVITPEETDTSLTYKLSVSKEDMGRVIGKQGRIAKAIRTLVY
CHHHHHHHHHHHHCCCCCEEECCCCCCCEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHH
AVGSKNDKKIRLEIIE
HHCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669