Click here to switch to the map view.

The map label for this gene is yodB [H]

Identifier: 226223820

GI number: 226223820

Start: 1221039

End: 1221362

Strand: Direct

Name: yodB [H]

Synonym: Lm4b_01225

Alternate gene names: 226223820

Gene position: 1221039-1221362 (Clockwise)

Preceding gene: 226223818

Following gene: 226223821

Centisome position: 41.92

GC content: 42.28

Gene sequence:

>324_bases
ATGACTGATGCACATACAGTATGTCCGAAGTTTGAATCGGCGTTCCAATTACTAGGTAAACGCTGGACTGGACTTATCAT
CAATGTCTTACTGACTGGTCCAAAAAGGTTTAAACAAGTCGCCGCTGAGATCCCGCAAATGAGTGATCGGGTGCTTGCAG
AACGTTTGAAGGAACTTGAGGAAATGGATATTTGCTTAAGACAAGTTTATCCAGAAACTCCTGTACGCATTGAATATGAA
TTAACCGAAAAAGGGAAAGCACTCCAAGAAGTAATGCTTGAAGTCCAGTGCTGGGCGGATAAATGGGTGGAAGTACCTAA
TTAA

Upstream 100 bases:

>100_bases
TTGGTCAATCGGGCCACAACTTACTAAATATAAGCAACATAATATTTATTAGTTACTTTCTGATGATAGATATGGTACAA
TAACGTTAGAGGTGAGAATT

Downstream 100 bases:

>100_bases
AAAAGAAATAATCTCTCCAACCAATATGGAGAGATTATTTTTTAGCTTGAATCTTTCCTAGAACCATACTATAATAGAAA
CTATCTAAATAACTAAAGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 106

Protein sequence:

>107_residues
MTDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELEEMDICLRQVYPETPVRIEYE
LTEKGKALQEVMLEVQCWADKWVEVPN

Sequences:

>Translated_107_residues
MTDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELEEMDICLRQVYPETPVRIEYE
LTEKGKALQEVMLEVQCWADKWVEVPN
>Mature_106_residues
TDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELEEMDICLRQVYPETPVRIEYEL
TEKGKALQEVMLEVQCWADKWVEVPN

Specific function: Negatively regulates yodC and azoR1 which may contribute to the degradation of aromatic compounds. Probably positively regulates the catechol-specific transcription of mhqNOP, mhqED, and mhqA [H]

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12419; Mature: 12287

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
EMDICLRQVYPETPVRIEYELTEKGKALQEVMLEVQCWADKWVEVPN
HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEIPQMSDRVLAERLKELE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
EMDICLRQVYPETPVRIEYELTEKGKALQEVMLEVQCWADKWVEVPN
HHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]