Click here to switch to the map view.

The map label for this gene is ysgA [H]

Identifier: 226223818

GI number: 226223818

Start: 1219720

End: 1220478

Strand: Direct

Name: ysgA [H]

Synonym: Lm4b_01223

Alternate gene names: 226223818

Gene position: 1219720-1220478 (Clockwise)

Preceding gene: 226223817

Following gene: 226223820

Centisome position: 41.88

GC content: 39.39

Gene sequence:

>759_bases
ATGGAACAGATTCAATCAGTAAAAAACGACCGTGTCAAAACATGGAAAAAACTACAAACGAGAAAAGGCCGCGATAAAAC
CGGGACTTATTTGGTGGAAGGCTTTCATTTAGTGGAAGAAGCATTGCGTCAAGATGGTTTAGTACTGGAGCTGCTTGTTT
CAAGTGGTGTTTCTGTTCCGGAAGAGTGGTTAAAAGGCGATTACGATGTATTTGAAATTAGTACAGAAATCAGCCACTTA
ATTAGCGAAACAATGACAGAGCAAGGTGTTTTTGCAGTAGTCGCAACATCTGAACCAGATATGATGCTTTTATATGGGAA
AAAATTATTGCTAGTAGATGCAGTGCAAGATCCAGGCAACGTAGGTACGTTAATTCGTACGGCTGATGCTGCTGGATATG
ATTGTGTCGTACTTGGCAAGGGAAGTGCAGATCTTTATAATCCTAAAGTAATTCGTAGTACGCAAGGTAGTCATTTCCAT
ATTCCCGTTATTCAAGCAGATTTATTTGATTGGATTGCGAATTTAGAAGAAGAGGGCGTTCCAGTTATTGGCGCAGTTCT
TGATGACCAAGCGAAATCATTAAACGACATGACAAAACGCGACACTTTAGCGTTGATGGTCGGAAATGAAGGTAATGGCA
TTTCTCCTGAATTACAAGATCGTCTTTCTGAAAAAGTATATATTCCAATTTATGGTGACAGTGAATCATTGAATGTCGCA
GTTGCTGCTGGAATTCTACTTTACGGCTTAAGAAAATAA

Upstream 100 bases:

>100_bases
AATGCAGTAAAACTAATTACCGAAGTAGTCAAACGTTTAGATAAAGAAAAAGTAACAGAAATTCGCTTAGGTTGAGTTTC
GAGAAAAGAGGACAACTTTT

Downstream 100 bases:

>100_bases
AGAAAAAGTGGTGGCTAAGTTGTTTTGACTTAGTCACCACTTTTTTAGATTTCTTCTTGTTTTTCAATAGCTACTTCCCG
AATAGCAACGCGTTTTAAAT

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MEQIQSVKNDRVKTWKKLQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELLVSSGVSVPEEWLKGDYDVFEISTEISHL
ISETMTEQGVFAVVATSEPDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFH
IPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA
VAAGILLYGLRK

Sequences:

>Translated_252_residues
MEQIQSVKNDRVKTWKKLQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELLVSSGVSVPEEWLKGDYDVFEISTEISHL
ISETMTEQGVFAVVATSEPDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFH
IPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA
VAAGILLYGLRK
>Mature_252_residues
MEQIQSVKNDRVKTWKKLQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELLVSSGVSVPEEWLKGDYDVFEISTEISHL
ISETMTEQGVFAVVATSEPDMMLLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFH
IPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA
VAAGILLYGLRK

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI8922534, Length=175, Percent_Identity=33.7142857142857, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI1790623, Length=177, Percent_Identity=31.638418079096, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 27653; Mature: 27653

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQIQSVKNDRVKTWKKLQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELLVSSGVSVP
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHCCEEEEEHHHCCCCCC
EEWLKGDYDVFEISTEISHLISETMTEQGVFAVVATSEPDMMLLYGKKLLLVDAVQDPGN
HHHHCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCEEEEEEECCCCCC
VGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQADLFDWIANLEEEGV
CCCEEEECCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHCHHHCCC
PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA
CEEEHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCCCHHH
VAAGILLYGLRK
HHHHHHHHHCCC
>Mature Secondary Structure
MEQIQSVKNDRVKTWKKLQTRKGRDKTGTYLVEGFHLVEEALRQDGLVLELLVSSGVSVP
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEHHHHHHHHHHHHHCCEEEEEHHHCCCCCC
EEWLKGDYDVFEISTEISHLISETMTEQGVFAVVATSEPDMMLLYGKKLLLVDAVQDPGN
HHHHCCCCEEEEHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEECCEEEEEEECCCCCC
VGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFHIPVIQADLFDWIANLEEEGV
CCCEEEECCCCCCEEEEEECCCCCCCCCEEEECCCCCEEEEEEHHHHHHHHHHCHHHCCC
PVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPELQDRLSEKVYIPIYGDSESLNVA
CEEEHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHCCEEEEEEECCCCCCHHH
VAAGILLYGLRK
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]