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The map label for this gene is ysdC [H]

Identifier: 226223817

GI number: 226223817

Start: 1218615

End: 1219694

Strand: Direct

Name: ysdC [H]

Synonym: Lm4b_01222

Alternate gene names: 226223817

Gene position: 1218615-1219694 (Clockwise)

Preceding gene: 226223816

Following gene: 226223818

Centisome position: 41.84

GC content: 41.48

Gene sequence:

>1080_bases
ATGGATGAACAATTAAAGATGTTAAAAGCATTAACAGATGCAAAAGGTATTCCCGGTAACGAACGTGCAGTGAGAAATGT
GTTCCGCGAATACATCGAACCGCTAGCGGATAGTTTTGAAACAGATGGCTTAGGAAGTGCTGTTGCAAAAAAAGTCGGAG
CAGAAGATGGACCTAAAATTATGATTGCTGGCCATTTAGATGAAGTTGGCTTTATGGTAACGCAAATTGACGATAAAGGT
TTTATCAAATTTCAAACTGTGGGCGGCTGGGTTTCCCAAGTAATGCTCGCACAAAAAGTAACTATCGTGACGCGCTCTGG
CGAAGAAATCACAGGTGTTATCGGTTCTAAACCACCACATGTGATGACAGCAGCAGAACGCCAAAAATCATTCGATATTA
AAGACATGTTTATTGATGTCGGTGCAGTAGATAAAGCTGAAGTGGAGAGCTATGGCATTCGTCCAGGCGACATGATTGTA
CCTGCTTTTGACTTTACCGTAATGAAAAACGAAAAATTCTTACTTGCAAAAGCATGGGATAACCGTATTGGCCTTGCAAT
TGCGATTGAAGTACTTAAAAACTTACAAAAAGAACAACATCCAAATATCGTTTACGGTGTAGGAACTGTTCAAGAAGAAG
TTGGTTTACGTGGTGCCAAAACAGCTGCGCATTTCGTTCAACCAGATATTGGTTTTGCCGTTGACGTTGGTATCGCAGGA
GATACACCAGGCGTTACAGACAAAGAAGCAATGAGCAAAATGGGTGAGGGTCCACAAATCGTCATTTACGATGCATCTAT
GGTAGCGCATGCCGGACTTCGTGATTTTGTCACAGATGTAGCGGATGAACTATCTATCCCTTACCAATTTGAAGCAATCC
CAATGGGCGGTACAGACTCAGGTTCCATCCACTTAACTGGAAACGGAATCCCGTCTCTATCCATTACCATTGCAACACGC
TACATTCATTCTCATTCCTCGATGCTACACCGTGATGATTTTGAAAATGCAGTAAAACTAATTACCGAAGTAGTCAAACG
TTTAGATAAAGAAAAAGTAACAGAAATTCGCTTAGGTTGA

Upstream 100 bases:

>100_bases
AAAAAGCTGAATAGATTACTCGGCTTTTTTTGCGTTTTCAAAGGATTTTTAGAAAGAAACTGTTATAATGAAAATGGAGT
TTATAAGGAGGGTTATTTAT

Downstream 100 bases:

>100_bases
GTTTCGAGAAAAGAGGACAACTTTTATGGAACAGATTCAATCAGTAAAAAACGACCGTGTCAAAACATGGAAAAAACTAC
AAACGAGAAAAGGCCGCGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 359; Mature: 359

Protein sequence:

>359_residues
MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGLGSAVAKKVGAEDGPKIMIAGHLDEVGFMVTQIDDKG
FIKFQTVGGWVSQVMLAQKVTIVTRSGEEITGVIGSKPPHVMTAAERQKSFDIKDMFIDVGAVDKAEVESYGIRPGDMIV
PAFDFTVMKNEKFLLAKAWDNRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRGAKTAAHFVQPDIGFAVDVGIAG
DTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDFVTDVADELSIPYQFEAIPMGGTDSGSIHLTGNGIPSLSITIATR
YIHSHSSMLHRDDFENAVKLITEVVKRLDKEKVTEIRLG

Sequences:

>Translated_359_residues
MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGLGSAVAKKVGAEDGPKIMIAGHLDEVGFMVTQIDDKG
FIKFQTVGGWVSQVMLAQKVTIVTRSGEEITGVIGSKPPHVMTAAERQKSFDIKDMFIDVGAVDKAEVESYGIRPGDMIV
PAFDFTVMKNEKFLLAKAWDNRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRGAKTAAHFVQPDIGFAVDVGIAG
DTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDFVTDVADELSIPYQFEAIPMGGTDSGSIHLTGNGIPSLSITIATR
YIHSHSSMLHRDDFENAVKLITEVVKRLDKEKVTEIRLG
>Mature_359_residues
MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGLGSAVAKKVGAEDGPKIMIAGHLDEVGFMVTQIDDKG
FIKFQTVGGWVSQVMLAQKVTIVTRSGEEITGVIGSKPPHVMTAAERQKSFDIKDMFIDVGAVDKAEVESYGIRPGDMIV
PAFDFTVMKNEKFLLAKAWDNRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRGAKTAAHFVQPDIGFAVDVGIAG
DTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDFVTDVADELSIPYQFEAIPMGGTDSGSIHLTGNGIPSLSITIATR
YIHSHSSMLHRDDFENAVKLITEVVKRLDKEKVTEIRLG

Specific function: Putative aminopeptidase [H]

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=352, Percent_Identity=39.4886363636364, Blast_Score=278, Evalue=4e-76,
Organism=Escherichia coli, GI1788727, Length=354, Percent_Identity=33.8983050847458, Blast_Score=197, Evalue=9e-52,
Organism=Escherichia coli, GI87082417, Length=345, Percent_Identity=30.7246376811594, Blast_Score=149, Evalue=4e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 38972; Mature: 38972

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGLGSAVAKKVGAEDGPKI
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEE
MIAGHLDEVGFMVTQIDDKGFIKFQTVGGWVSQVMLAQKVTIVTRSGEEITGVIGSKPPH
EEEECCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHEEEEEECCCEEEEECCCCCCC
VMTAAERQKSFDIKDMFIDVGAVDKAEVESYGIRPGDMIVPAFDFTVMKNEKFLLAKAWD
EEEHHHHHHCCCHHHHEEECCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEEECCC
NRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRGAKTAAHFVQPDIGFAVDVGIAG
CCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCHHHHHHCCCCCCEEEEEEECC
DTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDFVTDVADELSIPYQFEAIPMGGTDS
CCCCCCCHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
GSIHLTGNGIPSLSITIATRYIHSHSSMLHRDDFENAVKLITEVVKRLDKEKVTEIRLG
CEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCC
>Mature Secondary Structure
MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGLGSAVAKKVGAEDGPKI
CCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEE
MIAGHLDEVGFMVTQIDDKGFIKFQTVGGWVSQVMLAQKVTIVTRSGEEITGVIGSKPPH
EEEECCCCCCEEEEEECCCCCEEEEECHHHHHHHHHHHHEEEEEECCCEEEEECCCCCCC
VMTAAERQKSFDIKDMFIDVGAVDKAEVESYGIRPGDMIVPAFDFTVMKNEKFLLAKAWD
EEEHHHHHHCCCHHHHEEECCCCCHHHHHHCCCCCCCEEEEEEEEEEECCCEEEEEECCC
NRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRGAKTAAHFVQPDIGFAVDVGIAG
CCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHCCCCCHHHHHHCCCCCCEEEEEEECC
DTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDFVTDVADELSIPYQFEAIPMGGTDS
CCCCCCCHHHHHHCCCCCEEEEEECHHHHHCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
GSIHLTGNGIPSLSITIATRYIHSHSSMLHRDDFENAVKLITEVVKRLDKEKVTEIRLG
CEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]