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The map label for this gene is pocR [H]

Identifier: 226223789

GI number: 226223789

Start: 1195809

End: 1196360

Strand: Reverse

Name: pocR [H]

Synonym: Lm4b_01193

Alternate gene names: 226223789

Gene position: 1196360-1195809 (Counterclockwise)

Preceding gene: 226223810

Following gene: 226223751

Centisome position: 41.07

GC content: 31.7

Gene sequence:

>552_bases
TTGGAGAAAGAAAAAGTTGTAAATATTCAACCTTTGATGGATAGTCAAGTAGAGAGCCAATTCACCCAACAAATTCAAGA
AGATTTCAACAAAAAAAATCCAGATCACTCTGCCCTACTTCATTCACTTGAAACCGTTGAAGTGCTTGATGTTTTAAGCG
ATTATTACTCTGCACATGAAAAACAAAAACAACCAAGAAAAGAAACCACTAGCGTAAACAAAACTGGTAAAGAGCATAAA
GAAATCAAGCAAGCTATTCGTTACATTAAAAAAAACATTCACCGCTCCATCACATTAGAAGAAGTTGCTAATTATGTCTA
TCTAAGCCCGTTTTATTTAAGTAAATTATTTAAAAACGAATTAAATATTAATTTTATTAATTACGTCAACGAACAAAAAA
TGCTCTATGCGAAAGAACAACTAGAAAAAAGTGACTGGGCGGTCCATACAATTGCTAAAAATTTAGGTTTTTCAAGGGCA
AGCTATTTTTGCAAAGTCTTTAAAAAAGAATTCGATATGACACCAAAAGAATATCGCGACTCCTTAAAATAA

Upstream 100 bases:

>100_bases
AAAAAGAATTTATTGTTCTATTTAAAATGCAGGATTAAACGTTATTTAAAGCGATTTTATGGTATAATTAGTGCAGAAAT
AAAACAGGGAGGGAAGAACT

Downstream 100 bases:

>100_bases
AAAACGATTTCAGCCAAAGCCGAAATCGTTTTTTATTATTATTATGACTGCCAATCAGCCGGATAAGTAACATAAATAAA
TCTTGCTTCACCAGTTACGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYSAHEKQKQPRKETTSVNKTGKEHK
EIKQAIRYIKKNIHRSITLEEVANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRA
SYFCKVFKKEFDMTPKEYRDSLK

Sequences:

>Translated_183_residues
MEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYSAHEKQKQPRKETTSVNKTGKEHK
EIKQAIRYIKKNIHRSITLEEVANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRA
SYFCKVFKKEFDMTPKEYRDSLK
>Mature_183_residues
MEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYSAHEKQKQPRKETTSVNKTGKEHK
EIKQAIRYIKKNIHRSITLEEVANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRA
SYFCKVFKKEFDMTPKEYRDSLK

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788725, Length=91, Percent_Identity=36.2637362637363, Blast_Score=77, Evalue=8e-16,
Organism=Escherichia coli, GI1790391, Length=107, Percent_Identity=36.4485981308411, Blast_Score=73, Evalue=9e-15,
Organism=Escherichia coli, GI1786251, Length=99, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1790497, Length=103, Percent_Identity=28.1553398058252, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 21707; Mature: 21707

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYSAHE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KQKQPRKETTSVNKTGKEHKEIKQAIRYIKKNIHRSITLEEVANYVYLSPFYLSKLFKNE
HHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
LNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFDMTPKEYRD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHH
SLK
CCC
>Mature Secondary Structure
MEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYSAHE
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
KQKQPRKETTSVNKTGKEHKEIKQAIRYIKKNIHRSITLEEVANYVYLSPFYLSKLFKNE
HHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
LNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFDMTPKEYRD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHH
SLK
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]