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The map label for this gene is pocR [H]

Identifier: 226223751

GI number: 226223751

Start: 1162490

End: 1163374

Strand: Reverse

Name: pocR [H]

Synonym: Lm4b_01155

Alternate gene names: 226223751

Gene position: 1163374-1162490 (Counterclockwise)

Preceding gene: 226223789

Following gene: 226223741

Centisome position: 39.94

GC content: 37.97

Gene sequence:

>885_bases
ATGTTACTACAGTCCAAAAGCAACGAAATGCTCATTGAAAAAGTAATGGATGAGTTCTCAGCCGCAACCAGTTTAGCCTC
CGTTGTTGTAGATATACACGGTACCGAAGTTTCTAGATTATGTAACTTTACTCCTTTTTGCCAACTTATTCGCTCCAATC
CCAAATATCGCTCCCTTTGCCAAAAATGTGATATGTTTGGTGGACTGGAAGCCTCCAAAACCGGAAAGCCTTTAATTTAT
CGATGTCACGCCGGGTTAACAGATTTCTCAGTTCCCATCGTCGTCGAAAACCAACTTAGCGGATTTTTACTTAGTGGCCA
GGTTATTTGTGAAGAAAGTAGCGAAGTTGGTAATATTCAAGCAGAAGAAACCGATTGGAAAAATGATAAAGAGCTCATCT
CCGCATTTCGCTCTGTCCCTGTTTTCAGCTCCAAGAAAATTAATTCTTCTGCCGAAATGCTCACGATTATCTCCCAGTAT
TACTTGAAATCCGAAATGGAAAAAAGCCGGGAAGAGCAAAAGCAAAAAATTGTTTTTCATCATGCAAAAATAGCGCATCA
TGAAGAAAATAAAGAAATTCGGAAAGCACTTAAGTATATCGAGAAAAATCTCAACCGACCGATTACACTTGATGAAGTGG
CAAGTCATGTGTACCTTAGCTCTTATTATTTTAGTAAGTTATTCAAAAAAGAAATGAATGTGAATTTCATCAATTATGTG
AACCAAAAGAAAATGTCACTTGCCAAAGAAATGTTGAAAAATCCACGTTTGTCCATTGATAATATCGCACGGAACCTAGG
CTTCACACAAACAAGCTATTTCTGTAAAGTCTTCCGGAAAGAGTTTGAAGTTACGCCAAAAGGCTACCGCGAAACATTAA
AATAA

Upstream 100 bases:

>100_bases
TATATTGTTATCTTCATGGCAAGAAAATGTAAGCGCATTATAAATATGCTATACTAAGAACGACAGAAACACGCCAAGTC
TCGCCGAAAGGGGAATAGCT

Downstream 100 bases:

>100_bases
GTTTTATCTAAAAGTCATGTTCTCTTCCCTTTAGGAATATGACTTTTTTGTTGCCTGAAAAACAAAAAAACTTTCATCCG
TCATCGAATGAGAGTTTATG

Product: regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MLLQSKSNEMLIEKVMDEFSAATSLASVVVDIHGTEVSRLCNFTPFCQLIRSNPKYRSLCQKCDMFGGLEASKTGKPLIY
RCHAGLTDFSVPIVVENQLSGFLLSGQVICEESSEVGNIQAEETDWKNDKELISAFRSVPVFSSKKINSSAEMLTIISQY
YLKSEMEKSREEQKQKIVFHHAKIAHHEENKEIRKALKYIEKNLNRPITLDEVASHVYLSSYYFSKLFKKEMNVNFINYV
NQKKMSLAKEMLKNPRLSIDNIARNLGFTQTSYFCKVFRKEFEVTPKGYRETLK

Sequences:

>Translated_294_residues
MLLQSKSNEMLIEKVMDEFSAATSLASVVVDIHGTEVSRLCNFTPFCQLIRSNPKYRSLCQKCDMFGGLEASKTGKPLIY
RCHAGLTDFSVPIVVENQLSGFLLSGQVICEESSEVGNIQAEETDWKNDKELISAFRSVPVFSSKKINSSAEMLTIISQY
YLKSEMEKSREEQKQKIVFHHAKIAHHEENKEIRKALKYIEKNLNRPITLDEVASHVYLSSYYFSKLFKKEMNVNFINYV
NQKKMSLAKEMLKNPRLSIDNIARNLGFTQTSYFCKVFRKEFEVTPKGYRETLK
>Mature_294_residues
MLLQSKSNEMLIEKVMDEFSAATSLASVVVDIHGTEVSRLCNFTPFCQLIRSNPKYRSLCQKCDMFGGLEASKTGKPLIY
RCHAGLTDFSVPIVVENQLSGFLLSGQVICEESSEVGNIQAEETDWKNDKELISAFRSVPVFSSKKINSSAEMLTIISQY
YLKSEMEKSREEQKQKIVFHHAKIAHHEENKEIRKALKYIEKNLNRPITLDEVASHVYLSSYYFSKLFKKEMNVNFINYV
NQKKMSLAKEMLKNPRLSIDNIARNLGFTQTSYFCKVFRKEFEVTPKGYRETLK

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG4936

COG function: function code TK; Predicted sensor domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788725, Length=91, Percent_Identity=35.1648351648352, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1790391, Length=92, Percent_Identity=35.8695652173913, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790497, Length=105, Percent_Identity=28.5714285714286, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786251, Length=106, Percent_Identity=30.188679245283, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33836; Mature: 33836

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLQSKSNEMLIEKVMDEFSAATSLASVVVDIHGTEVSRLCNFTPFCQLIRSNPKYRSLC
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCHHHHHH
QKCDMFGGLEASKTGKPLIYRCHAGLTDFSVPIVVENQLSGFLLSGQVICEESSEVGNIQ
HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEECCEEEECCCCCCCCCC
AEETDWKNDKELISAFRSVPVFSSKKINSSAEMLTIISQYYLKSEMEKSREEQKQKIVFH
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAKIAHHEENKEIRKALKYIEKNLNRPITLDEVASHVYLSSYYFSKLFKKEMNVNFINYV
HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
NQKKMSLAKEMLKNPRLSIDNIARNLGFTQTSYFCKVFRKEFEVTPKGYRETLK
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHCC
>Mature Secondary Structure
MLLQSKSNEMLIEKVMDEFSAATSLASVVVDIHGTEVSRLCNFTPFCQLIRSNPKYRSLC
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCCHHHHHH
QKCDMFGGLEASKTGKPLIYRCHAGLTDFSVPIVVENQLSGFLLSGQVICEESSEVGNIQ
HHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCCCCEEECCEEEECCCCCCCCCC
AEETDWKNDKELISAFRSVPVFSSKKINSSAEMLTIISQYYLKSEMEKSREEQKQKIVFH
CCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HAKIAHHEENKEIRKALKYIEKNLNRPITLDEVASHVYLSSYYFSKLFKKEMNVNFINYV
HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
NQKKMSLAKEMLKNPRLSIDNIARNLGFTQTSYFCKVFRKEFEVTPKGYRETLK
HHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]