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The map label for this gene is pdtaR [H]

Identifier: 226223773

GI number: 226223773

Start: 1182391

End: 1182972

Strand: Direct

Name: pdtaR [H]

Synonym: Lm4b_01177

Alternate gene names: 226223773

Gene position: 1182391-1182972 (Clockwise)

Preceding gene: 226223772

Following gene: 226223774

Centisome position: 40.59

GC content: 39.35

Gene sequence:

>582_bases
GTGACAGGAATGAATGGAAGAATTGTAATAGCCGATGATGAACCTATTACAAGAATGGACATCCGAGACATCTTAGAAGA
AGCGAACTACAATGTTGTAGGGGAAGCGACAGATGGTTTTGAAGCAATCGAACTTTGCAAAAGCCATCAGCCAGATCTTG
TTATCATGGACATTCAAATGCCACTCTTAGACGGCTTAAAAGCAGGGAAACGAATTATTTCAGAAGGCCTTGCTGGCGGA
ATTATCTTACTTACCGCTTTTAGTGATCCGAAAAACACCGAGAAAGCAAAAGGGTTTGGAGCATTAGGTTATTTAGTAAA
GCCACTTGATGAAAAAAGTTTGATTCCAACTGTTGAAATGAGTATTGCCAAAGGGCGAGAAACAAGAAAATTAGAGCAGC
AATTAGAAAAGCTCACCAAAAAATTAGAAGAACGAAAAGTGATTGAAAAAGCAAAAGGTGTGCTTATGATTGAGAACAAC
ATCACAGAAGAAGAAGCTTACAATATGATTCGTAACCTGAGCATGGACAAACGCTGTCCGATGATGGAAATCGCAGAAAC
GATTGTGATGAGCGATGACTAA

Upstream 100 bases:

>100_bases
TTTTTCTCTAGCTCTTTTACTCTTTCGCTCAAGTAAATGCTTCTATAGAATGATTTTGTCCTTTATTGTGACGAATCAAT
CAATAGCAGAAGAAGAGGAC

Downstream 100 bases:

>100_bases
AACGATTCGAGAAATGTGCTTACGCTACACAGATTTATCGGAGCACGATATTGAAGAATTAATTCACACAGCCAAGTCGT
TAAGTGTTTCAGCCATGTAT

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 192

Protein sequence:

>193_residues
MTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGG
IILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENN
ITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD

Sequences:

>Translated_193_residues
MTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGG
IILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENN
ITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD
>Mature_192_residues
TGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGI
ILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNI
TEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=142, Percent_Identity=35.9154929577465, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI87082052, Length=124, Percent_Identity=34.6774193548387, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1788222, Length=101, Percent_Identity=36.6336633663366, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788191, Length=110, Percent_Identity=32.7272727272727, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21542; Mature: 21411

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQM
CCCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCEEEEEECC
PLLDGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEM
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCHHHHHHCCCCCCCCCCHHHH
SIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITEEEAYNMIRNLSMDKRCP
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCCC
MMEIAETIVMSDD
HHHHHHHHHCCCC
>Mature Secondary Structure 
TGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIELCKSHQPDLVIMDIQM
CCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCCEEEEEECC
PLLDGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGALGYLVKPLDEKSLIPTVEM
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCCHHHHHHCCCCCCCCCCHHHH
SIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENNITEEEAYNMIRNLSMDKRCP
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHCCCCCCCC
MMEIAETIVMSDD
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]