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The map label for this gene is yvrC [H]

Identifier: 226223687

GI number: 226223687

Start: 1099477

End: 1100370

Strand: Direct

Name: yvrC [H]

Synonym: Lm4b_01089

Alternate gene names: 226223687

Gene position: 1099477-1100370 (Clockwise)

Preceding gene: 226223686

Following gene: 226223688

Centisome position: 37.75

GC content: 35.46

Gene sequence:

>894_bases
ATGAAATGGTTTAAAGGAATTGCCGTAGTTTTATTGCTTGCTATTTTAACTGCATGCGGGAATACGGAAGTAAAAGAGAC
AACAAAGCAAACAGAAGAAATCAAAGTGAAAGATGCAACTGGTGAAACAATTACACTGAAAAAAGCTCCAACTAAAATTG
TTTCATTAATTCCAAGTAATACAGAAATTTTATTTGCACTAGGACTTGGTGATGAAGTAAAAGGAGTATCGGCATATGAT
GATTATCCAAAAGAAGCTCAGAAAATAGAGAAAGTGACTTCTACTTCAGTTGATACAGAAAAAATTATTGCTCTTAAGCC
TGATTTAGTTCTTGGACACGAATCGATGCTTGCAACAGAAAAAGACGCTTATAAAATACTTACAGATGCGGGAATTAACG
TGTTTGTAGTTCCAGACGCAACAAACTTAAAGGAAGTAGAAAAATCGATTGCTACCATTGGTGATCTAACAGGAACAGAA
AAAGAAGCTACAAAAGTGACCGATTCAATGGAGAAACAAAAAATAGCTATTGAAAAGAAAGCGAAAGAATTAAAAACATC
CCCAAAAGTATGGATTGAAATTAGTCCAGACTTATACACAGCGGGAAAAGGAACATTTATGAATGAAATGTTAGAACTTG
CTGGTGGAACTAATATTGTAACAGAATCAGGGTTCATTCCTTACAACGAAGAAAAAGTAGTAGAACTGCAACCGGATATC
ATTTTGTCTGTCTATCCAGATGCCAAAGCAACTATCCAAAAACGTGCAGCATGGAAAGATATTCCAGCGGTTAAAAACGA
TAAAATCTATGAAATGGATGCCAATAAATTAAGTCGTCCAGGACCAAGATTGCTTGAAGGGGCAGCAGATATTCAGGCTG
TTCTTGAAAACTAA

Upstream 100 bases:

>100_bases
TTAAAAATCGATAAGTTAAACGTGAGAATAAAGACGTTTTTCCAGATTTATTAGTGTTAGATTTCCCGCCTGTTTTTTCT
GAAAAAAGGAGAACATACAT

Downstream 100 bases:

>100_bases
TTCTTCGATAATTGCAGATGAAGCTTTACAAAAAATGACTTTTAAGGTAATTTAACATAGGGTGGATTTTTTACTAAACC
GTATTAGTAAAATAATTTGC

Product: metal binding protein (ABC transporter)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKWFKGIAVVLLLAILTACGNTEVKETTKQTEEIKVKDATGETITLKKAPTKIVSLIPSNTEILFALGLGDEVKGVSAYD
DYPKEAQKIEKVTSTSVDTEKIIALKPDLVLGHESMLATEKDAYKILTDAGINVFVVPDATNLKEVEKSIATIGDLTGTE
KEATKVTDSMEKQKIAIEKKAKELKTSPKVWIEISPDLYTAGKGTFMNEMLELAGGTNIVTESGFIPYNEEKVVELQPDI
ILSVYPDAKATIQKRAAWKDIPAVKNDKIYEMDANKLSRPGPRLLEGAADIQAVLEN

Sequences:

>Translated_297_residues
MKWFKGIAVVLLLAILTACGNTEVKETTKQTEEIKVKDATGETITLKKAPTKIVSLIPSNTEILFALGLGDEVKGVSAYD
DYPKEAQKIEKVTSTSVDTEKIIALKPDLVLGHESMLATEKDAYKILTDAGINVFVVPDATNLKEVEKSIATIGDLTGTE
KEATKVTDSMEKQKIAIEKKAKELKTSPKVWIEISPDLYTAGKGTFMNEMLELAGGTNIVTESGFIPYNEEKVVELQPDI
ILSVYPDAKATIQKRAAWKDIPAVKNDKIYEMDANKLSRPGPRLLEGAADIQAVLEN
>Mature_297_residues
MKWFKGIAVVLLLAILTACGNTEVKETTKQTEEIKVKDATGETITLKKAPTKIVSLIPSNTEILFALGLGDEVKGVSAYD
DYPKEAQKIEKVTSTSVDTEKIIALKPDLVLGHESMLATEKDAYKILTDAGINVFVVPDATNLKEVEKSIATIGDLTGTE
KEATKVTDSMEKQKIAIEKKAKELKTSPKVWIEISPDLYTAGKGTFMNEMLELAGGTNIVTESGFIPYNEEKVVELQPDI
ILSVYPDAKATIQKRAAWKDIPAVKNDKIYEMDANKLSRPGPRLLEGAADIQAVLEN

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=258, Percent_Identity=29.4573643410853, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 32441; Mature: 32441

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKWFKGIAVVLLLAILTACGNTEVKETTKQTEEIKVKDATGETITLKKAPTKIVSLIPSN
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEECCCCEEEEECCCCCHHHCCCCC
TEILFALGLGDEVKGVSAYDDYPKEAQKIEKVTSTSVDTEKIIALKPDLVLGHESMLATE
CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCEEECCHHHHHCC
KDAYKILTDAGINVFVVPDATNLKEVEKSIATIGDLTGTEKEATKVTDSMEKQKIAIEKK
CHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
AKELKTSPKVWIEISPDLYTAGKGTFMNEMLELAGGTNIVTESGFIPYNEEKVVELQPDI
HHHHCCCCCEEEEECCCEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCE
ILSVYPDAKATIQKRAAWKDIPAVKNDKIYEMDANKLSRPGPRLLEGAADIQAVLEN
EEEECCCCHHHHHHHHHHHCCCCCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKWFKGIAVVLLLAILTACGNTEVKETTKQTEEIKVKDATGETITLKKAPTKIVSLIPSN
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEEEEECCCCEEEEECCCCCHHHCCCCC
TEILFALGLGDEVKGVSAYDDYPKEAQKIEKVTSTSVDTEKIIALKPDLVLGHESMLATE
CEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCEEECCHHHHHCC
KDAYKILTDAGINVFVVPDATNLKEVEKSIATIGDLTGTEKEATKVTDSMEKQKIAIEKK
CHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
AKELKTSPKVWIEISPDLYTAGKGTFMNEMLELAGGTNIVTESGFIPYNEEKVVELQPDI
HHHHCCCCCEEEEECCCEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCE
ILSVYPDAKATIQKRAAWKDIPAVKNDKIYEMDANKLSRPGPRLLEGAADIQAVLEN
EEEECCCCHHHHHHHHHHHCCCCCCCCEEEEECCHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]