Click here to switch to the map view.

The map label for this gene is ypdB [C]

Identifier: 226223602

GI number: 226223602

Start: 1016213

End: 1016668

Strand: Direct

Name: ypdB [C]

Synonym: Lm4b_01004

Alternate gene names: 226223602

Gene position: 1016213-1016668 (Clockwise)

Preceding gene: 226223601

Following gene: 226223603

Centisome position: 34.89

GC content: 32.89

Gene sequence:

>456_bases
ATGAAATTCCATGTGAAGCAAAATAATAATTTAGCAGTTGGTGAAGTGGATGTGTATTGCCATCCCGATAATTTAGAAGA
AGTAACGAACATGGTAATAGGAATAGAAGAGTCAGCTGAAAAAATCTCAGTCAAAAAGGATGGAGCCACTTATTTACTAG
AACCAAAAGCCATTTTATATTTTGAGGCAGTCGAAAGTAAGATTTTTGTTTATACGGAAAAAGAAATTTATGAAATCCAT
TGGAAATTATATGAACTGGAAGAAAAATTCAAGGAGAGTTCTTTTTTCAGATGTTCGAAATCAATGATCTTAAATATTGA
ATGGATTGAAAAGATTGCCCCTGGCTTCAACGGTAAATTTGAAGCGAAACTTTTAAATCGAGAAAAAGTAATTATTTCTC
GGCAGTACGCGAAGGTTTTAAAGCAAAAATTAAACATGGGAGGTAAGCGGAAATGA

Upstream 100 bases:

>100_bases
GAGTTTTTTGCATCTTAGTTAGTTAAAAATGCATGTTACTGAAATCAGCTTGTAGTTTTTGACATGGCGTTTATAATAAA
AGAAAAAGGGAGGCAACCAG

Downstream 100 bases:

>100_bases
GTACTAAACTAATTCAATTTATACAATCAGCATGCCTTATTTTTTCTGCCTCTATTATCACGATGATCTGCTCTTACATC
GCAACTGGAGAATCAGAAAC

Product: two-component response regulator

Products: NA

Alternate protein names: Two-Component Response Regulator; Transcriptional Regulator; LytR/AlgR Family Response Regulator; Response Regulator Of LytR/AlgR Family; Ypothetical Protein SMU.; LytTr Domain Transcriptional Regulator

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNMVIGIEESAEKISVKKDGATYLLEPKAILYFEAVESKIFVYTEKEIYEIH
WKLYELEEKFKESSFFRCSKSMILNIEWIEKIAPGFNGKFEAKLLNREKVIISRQYAKVLKQKLNMGGKRK

Sequences:

>Translated_151_residues
MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNMVIGIEESAEKISVKKDGATYLLEPKAILYFEAVESKIFVYTEKEIYEIH
WKLYELEEKFKESSFFRCSKSMILNIEWIEKIAPGFNGKFEAKLLNREKVIISRQYAKVLKQKLNMGGKRK
>Mature_151_residues
MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNMVIGIEESAEKISVKKDGATYLLEPKAILYFEAVESKIFVYTEKEIYEIH
WKLYELEEKFKESSFFRCSKSMILNIEWIEKIAPGFNGKFEAKLLNREKVIISRQYAKVLKQKLNMGGKRK

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17687; Mature: 17687

Theoretical pI: Translated: 8.63; Mature: 8.63

Prosite motif: PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNMVIGIEESAEKISVKKDGATYLLEPKAILY
CEEEEECCCCEEEEEEEEEECCCCHHHHHHHEECCCCCHHEEEEECCCCEEEECCCEEEE
FEAVESKIFVYTEKEIYEIHWKLYELEEKFKESSFFRCSKSMILNIEWIEKIAPGFNGKF
EEECCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHEECHHHEEEHHHHHHHCCCCCCEE
EAKLLNREKVIISRQYAKVLKQKLNMGGKRK
EEEEECCCHHEEEHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNMVIGIEESAEKISVKKDGATYLLEPKAILY
CEEEEECCCCEEEEEEEEEECCCCHHHHHHHEECCCCCHHEEEEECCCCEEEECCCEEEE
FEAVESKIFVYTEKEIYEIHWKLYELEEKFKESSFFRCSKSMILNIEWIEKIAPGFNGKF
EEECCCEEEEEECCCEEEHHHHHHHHHHHHHHHHHHEECHHHEEEHHHHHHHCCCCCCEE
EAKLLNREKVIISRQYAKVLKQKLNMGGKRK
EEEEECCCHHEEEHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA