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The map label for this gene is yjbM [H]

Identifier: 226223585

GI number: 226223585

Start: 1000080

End: 1000748

Strand: Direct

Name: yjbM [H]

Synonym: Lm4b_00987

Alternate gene names: 226223585

Gene position: 1000080-1000748 (Clockwise)

Preceding gene: 226223581

Following gene: 226223586

Centisome position: 34.34

GC content: 37.67

Gene sequence:

>669_bases
TTGAATCATTGGGAAGACTTTTTAGCGCCATACAAACAGGCTGTGGAAGAACTTAAAATTAAACTTAAAGGAATGCGTTC
ACAATTTGAGCTTGAAAATAATCATTCGCCAATTGAATTTGTTACAGGCCGAGTGAAGCCGGTTGCGAGCATATTAGATA
AGGCCAATCAAAAGCATATTGCACTAGATCACTTAGTAGAAGAAATGCAGGATATTGCGGGACTCCGTATGATGTGCCAA
TTTGTAGATGATATTGAAGTAGTAGTGCGCCTTTTAAGACAGCGGAATGATTTTCGAATTGTAGAAGAACGCGATTATAT
TACAAACAAGAAACCCAGTGGTTACCGCTCCTATCACGTTGTTATTGAGTACCCAGTGGAAACAATTCAAGGAGAAAAGA
AAATCTTAGCTGAAATCCAAATTAGGACACTTGCAATGAATTTTTGGGCAACGATTGAGCATTCGGTAAACTACAAGTAT
CAAGGCGAATTTCCAGAAGCGATCAATAAACGTTTAAAGCGTGCTGCTGAGGCTGCTTTTCAACTAGATGAGGAAATGTC
GCAAATTCGCGAAGAAATACAAGAAGCGCAAGTTTATTTTTCTCAAAATAAAGACGTATCAAAGGATAAAAAAGCAGTGC
ATCAAGTAATGCCAAAGAAAAATAAGTAA

Upstream 100 bases:

>100_bases
AAAAAAAGGTTACTTTAAGCAAGGTGGATTAACTGCTTTTGTGTTAAAATAAAACTGATGTTGCATAAATTTAATCATGA
ATATACTTGAGGTGAGCGAT

Downstream 100 bases:

>100_bases
TTAGTTGTAGGAATAGGGGCGAATAGAAATAATGAAATATATGATTACTTCCAAAGGGGACGAAAAATCCGATTTGCTGC
GACTAAATATGATCGCAGGT

Product: YjbM protein

Products: NA

Alternate protein names: (p)ppGpp synthase yjbM; Small alarmone synthase 1; SAS 1 [H]

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MNHWEDFLAPYKQAVEELKIKLKGMRSQFELENNHSPIEFVTGRVKPVASILDKANQKHIALDHLVEEMQDIAGLRMMCQ
FVDDIEVVVRLLRQRNDFRIVEERDYITNKKPSGYRSYHVVIEYPVETIQGEKKILAEIQIRTLAMNFWATIEHSVNYKY
QGEFPEAINKRLKRAAEAAFQLDEEMSQIREEIQEAQVYFSQNKDVSKDKKAVHQVMPKKNK

Sequences:

>Translated_222_residues
MNHWEDFLAPYKQAVEELKIKLKGMRSQFELENNHSPIEFVTGRVKPVASILDKANQKHIALDHLVEEMQDIAGLRMMCQ
FVDDIEVVVRLLRQRNDFRIVEERDYITNKKPSGYRSYHVVIEYPVETIQGEKKILAEIQIRTLAMNFWATIEHSVNYKY
QGEFPEAINKRLKRAAEAAFQLDEEMSQIREEIQEAQVYFSQNKDVSKDKKAVHQVMPKKNK
>Mature_222_residues
MNHWEDFLAPYKQAVEELKIKLKGMRSQFELENNHSPIEFVTGRVKPVASILDKANQKHIALDHLVEEMQDIAGLRMMCQ
FVDDIEVVVRLLRQRNDFRIVEERDYITNKKPSGYRSYHVVIEYPVETIQGEKKILAEIQIRTLAMNFWATIEHSVNYKY
QGEFPEAINKRLKRAAEAAFQLDEEMSQIREEIQEAQVYFSQNKDVSKDKKAVHQVMPKKNK

Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. YjbM has probably a

COG id: COG2357

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the relA/spoT family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007685 [H]

Pfam domain/function: PF04607 RelA_SpoT [H]

EC number: =2.7.6.5 [H]

Molecular weight: Translated: 26138; Mature: 26138

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHWEDFLAPYKQAVEELKIKLKGMRSQFELENNHSPIEFVTGRVKPVASILDKANQKHI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCHH
ALDHLVEEMQDIAGLRMMCQFVDDIEVVVRLLRQRNDFRIVEERDYITNKKPSGYRSYHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEE
VIEYPVETIQGEKKILAEIQIRTLAMNFWATIEHSVNYKYQGEFPEAINKRLKRAAEAAF
EEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHH
QLDEEMSQIREEIQEAQVYFSQNKDVSKDKKAVHQVMPKKNK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNHWEDFLAPYKQAVEELKIKLKGMRSQFELENNHSPIEFVTGRVKPVASILDKANQKHI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHCCCCHH
ALDHLVEEMQDIAGLRMMCQFVDDIEVVVRLLRQRNDFRIVEERDYITNKKPSGYRSYHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCCCCCEEEE
VIEYPVETIQGEKKILAEIQIRTLAMNFWATIEHSVNYKYQGEFPEAINKRLKRAAEAAF
EEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHH
QLDEEMSQIREEIQEAQVYFSQNKDVSKDKKAVHQVMPKKNK
HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]