Click here to switch to the map view.

The map label for this gene is 226223573

Identifier: 226223573

GI number: 226223573

Start: 989118

End: 989963

Strand: Direct

Name: 226223573

Synonym: Lm4b_00975

Alternate gene names: NA

Gene position: 989118-989963 (Clockwise)

Preceding gene: 226223572

Following gene: 226223574

Centisome position: 33.96

GC content: 33.69

Gene sequence:

>846_bases
ATGGCAAACCTTTTTGAAAAAATGAAACAATGGAATAAAGAAGTTAGTGAAAAAATCGAGAAACGTGAAGAAAAACGTCG
CAATTCAGTAAGTTACTATATGGATAAAACAAAACAAGAAATGAAAGACGCAGAACGCATGGTAGAAAAACAACGCGAAC
TGAAATCTCTTTTCTATAAAGAATATAAAGAAATGGAAGTTTATGTAGAAAAACGCCGTCACCAAGCAGAAATTGCTAAA
GAAGCTGGTGAAACAAAACTTGCTGATTTCGCTTTAGAAGAAGTGGCTCAATATGAAGAACAATTAGAAGCTACGAAAGG
ACACTACGACCAAGCGTCCGAACAACTGGAAAAATTAGAACTACGCATGCACGAAATGCGCTTAAAATGGAAAAACCTTA
AAACACAACATTTAGCTGAAATGGCTGAAAAAAATGCAACAGAAACTTCCGAAAAAATGGACAAAGTTATCCATGATATG
AGCTGGGGTAGCGTAAGTGACTATCACGAAGCACAAAAACAACGCGATCTAGCTGAAGAAGCTGAAAAGAAAGCTGATAT
GAGCAAAGAACTTTCTCAATCCTTTGATGATCTAATGGACGAACTAGAAAAGAAAACAAAGAAAAGCAAAGAAATCATCA
AAGATAAAGCGCAAAACTTTACAACTATGGTAGATGAAATTATTGAACGCGAAAAACAAAATTTCAAAAAACCAGAAAAA
GCTTCGATGGAAGATCAATTAAATGAACTTGAAAAAGAAGCTGCAAAAGAAAAACCAAAAGAAGAAAAAGAAGTATTAAT
TCCAGAATTAGAGAAAAAAGAAGAAGAAAACGAAACAGATAAATAA

Upstream 100 bases:

>100_bases
CGGAGCAATCATTTACTTCCTAACTAGAAATAAAAATAAACCAAGAAAAAATGATGACGTATTCGACTACCCATACAATA
AATAATTGGAGGAGAAAAAA

Downstream 100 bases:

>100_bases
AAGTAATTAGCGCAGAATAATCATTCTGCGCTTTTTTATAACAAAACGCTATGGGCCTTCTAAATATGCTCGTAGCTTTT
TTGGTTATATTACTTTTTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MANLFEKMKQWNKEVSEKIEKREEKRRNSVSYYMDKTKQEMKDAERMVEKQRELKSLFYKEYKEMEVYVEKRRHQAEIAK
EAGETKLADFALEEVAQYEEQLEATKGHYDQASEQLEKLELRMHEMRLKWKNLKTQHLAEMAEKNATETSEKMDKVIHDM
SWGSVSDYHEAQKQRDLAEEAEKKADMSKELSQSFDDLMDELEKKTKKSKEIIKDKAQNFTTMVDEIIEREKQNFKKPEK
ASMEDQLNELEKEAAKEKPKEEKEVLIPELEKKEEENETDK

Sequences:

>Translated_281_residues
MANLFEKMKQWNKEVSEKIEKREEKRRNSVSYYMDKTKQEMKDAERMVEKQRELKSLFYKEYKEMEVYVEKRRHQAEIAK
EAGETKLADFALEEVAQYEEQLEATKGHYDQASEQLEKLELRMHEMRLKWKNLKTQHLAEMAEKNATETSEKMDKVIHDM
SWGSVSDYHEAQKQRDLAEEAEKKADMSKELSQSFDDLMDELEKKTKKSKEIIKDKAQNFTTMVDEIIEREKQNFKKPEK
ASMEDQLNELEKEAAKEKPKEEKEVLIPELEKKEEENETDK
>Mature_280_residues
ANLFEKMKQWNKEVSEKIEKREEKRRNSVSYYMDKTKQEMKDAERMVEKQRELKSLFYKEYKEMEVYVEKRRHQAEIAKE
AGETKLADFALEEVAQYEEQLEATKGHYDQASEQLEKLELRMHEMRLKWKNLKTQHLAEMAEKNATETSEKMDKVIHDMS
WGSVSDYHEAQKQRDLAEEAEKKADMSKELSQSFDDLMDELEKKTKKSKEIIKDKAQNFTTMVDEIIEREKQNFKKPEKA
SMEDQLNELEKEAAKEKPKEEKEVLIPELEKKEEENETDK

Specific function: Unknown

COG id: COG1842

COG function: function code KT; Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33664; Mature: 33533

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCCCC
>Mature Secondary Structure 
ANLFEKMKQWNKEVSEKIEKREEKRRNSVSYYMDKTKQEMKDAERMVEKQRELKSLFYK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EYKEMEVYVEKRRHQAEIAKEAGETKLADFALEEVAQYEEQLEATKGHYDQASEQLEKLE
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
LRMHEMRLKWKNLKTQHLAEMAEKNATETSEKMDKVIHDMSWGSVSDYHEAQKQRDLAEE
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
AEKKADMSKELSQSFDDLMDELEKKTKKSKEIIKDKAQNFTTMVDEIIEREKQNFKKPEK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
ASMEDQLNELEKEAAKEKPKEEKEVLIPELEKKEEENETDK
CCHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA