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The map label for this gene is ycjC [C]

Identifier: 226223423

GI number: 226223423

Start: 833989

End: 834531

Strand: Direct

Name: ycjC [C]

Synonym: Lm4b_00821

Alternate gene names: 226223423

Gene position: 833989-834531 (Clockwise)

Preceding gene: 226223420

Following gene: 226223424

Centisome position: 28.63

GC content: 37.2

Gene sequence:

>543_bases
ATGGAAATTGGCAAACGCATAAAAAATCTTAGGCTCAGTAAGAATTTGACACAAGAAGAATTAGGCGAACGAACGGATTT
GACGAAGGGATATATTTCTCAGCTAGAACGAGATTTGAGTTCTCCTTCTATCGAAACGTTATTTGCTATTTTGGAAGTGT
TAGGTTCTACTCCGAAAGATTTCTTTGATGAAGAAGAACACAATCAAAAAGTAATTTACGGAGAACTAGAGCATACTTTC
TTTGAAGATGAAGAAAAAGGTTACAGAATTAAGTGGCTTGTTCCAGAATCGAATGAAAAAGAAATGGAACCAGTGCTACT
TGAAATAGAGGCAAATAGCTGTTTTAAAAGCTTCGAACCATCACTTTCAGAAACTTTTGCCTACGTGCTAAAAGGGGAAG
TGACCGTGCTGCTTGGTCGAAATGAGTATGTAGCCAAAAAAGGGGAAGCAATTTATTTCCACGCCGCAGATGAACATCAA
ATAATTAATCGATCGAATGAACAAGCGACACTCATCTTAGTAGCGACAGAGTCATATTTATAA

Upstream 100 bases:

>100_bases
GTATAATGTAGCTTGCTGTAAGTAAACTTTGTGTTTAATATTAGTAAACTTCTGTGACTTGAGGTTTACTATCACTAAAC
TTGAAAGAAAGGACATTGAC

Downstream 100 bases:

>100_bases
GGGAGGTAAATGATTGTGACAGAAACAATTATTCGTTTTGAAAACGTAACAAAACAATTTGATAATGATCCACCAGTGCT
TGACAATGTCAGCTTTGAAA

Product: transcription regulator

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Cro/CI Family; Cro/CI Family Transcriptional Regulator; Cupin 2 Domain-Containing Protein; Transcriptional Regulator MerR Family; Cupin 2 Conserved Barrel Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Transcription Regulator; Helix-Turn-Helix Transcriptional Regulator PuuR; HTH-Type Transcriptional Regulator; Cupin 2 Conserved Barrel Domain-Containing Protein; Cupin Domain Protein; Epoxidase; Transcriptional Regulator Merr Family; Transcriptional Regulator XRE Family Protein; Helix-Turn-Helix Transcriptional Regulator; Helix-Turn-Helix Family Protein; Transcriptional Regulator Cro/CI Family Protein; Transcriptional Regulator Xre Family; Cupin/Helix-Turn-Helix Domain-Containing Protein

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFFDEEEHNQKVIYGELEHTF
FEDEEKGYRIKWLVPESNEKEMEPVLLEIEANSCFKSFEPSLSETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEHQ
IINRSNEQATLILVATESYL

Sequences:

>Translated_180_residues
MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFFDEEEHNQKVIYGELEHTF
FEDEEKGYRIKWLVPESNEKEMEPVLLEIEANSCFKSFEPSLSETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEHQ
IINRSNEQATLILVATESYL
>Mature_180_residues
MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFFDEEEHNQKVIYGELEHTF
FEDEEKGYRIKWLVPESNEKEMEPVLLEIEANSCFKSFEPSLSETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEHQ
IINRSNEQATLILVATESYL

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20742; Mature: 20742

Theoretical pI: Translated: 4.41; Mature: 4.41

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD
CCHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
FFDEEEHNQKVIYGELEHTFFEDEEKGYRIKWLVPESNEKEMEPVLLEIEANSCFKSFEP
HCCCCCCCCEEEEECHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHCCC
SLSETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEHQIINRSNEQATLILVATESYL
CHHHHHHHHHCCCEEEEECCCHHHHCCCCEEEEEECCCHHHHCCCCCCEEEEEEEECCCC
>Mature Secondary Structure
MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKD
CCHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHH
FFDEEEHNQKVIYGELEHTFFEDEEKGYRIKWLVPESNEKEMEPVLLEIEANSCFKSFEP
HCCCCCCCCEEEEECHHHHCCCCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHCCC
SLSETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEHQIINRSNEQATLILVATESYL
CHHHHHHHHHCCCEEEEECCCHHHHCCCCEEEEEECCCHHHHCCCCCCEEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA