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The map label for this gene is ybaK [C]

Identifier: 226223408

GI number: 226223408

Start: 820577

End: 821053

Strand: Reverse

Name: ybaK [C]

Synonym: Lm4b_00806

Alternate gene names: 226223408

Gene position: 821053-820577 (Counterclockwise)

Preceding gene: 226223411

Following gene: 226223407

Centisome position: 28.19

GC content: 39.83

Gene sequence:

>477_bases
TTGAATAAAAAGACAAATGCGTGTCGGATTTTAGATAAACAGAAGGTAAACTATGAATTACGTGAGTATGCATGGAGCGA
GGATTCCCTTGATGCGCTTCATGTTGCGGCAGAAACAGGGAATAATCCCGCACAGATTTTTAAAACCTTAGTCCTGACTG
GTGACAAAACAGGAAATATTGTCGCGTGCATTCCTGCCGATAAGACTTTGCATTTAAAACATTTGGCAAAGATTAGCGGT
AATAAAAAATGTGAATTGATTGCGGTAGATACGTTAGAGAAGCTGACTGGCTATATTCGCGGTGGATGTTCGCCGATTGG
AATGAAGAAATTATTTCCAACGTTTATTGATAACAGCGCTGAATCGCTGGATACTATACTGATTTCGGCTGGAAAAAGAG
GATTACAAATCGAACTAGCCCCTACTGATTTGAAAAAAGTAGTACGTGCGGAGTTTGCGATGATTACGGAAGAATAA

Upstream 100 bases:

>100_bases
GAATTCCACTTCATTGTACAGAATGAAAAGGGAAAAGCCAACTATTTCACAAAAAGTGTCATAAATTATACATATTTCTG
AATTAATTGAGGTGAAAGAC

Downstream 100 bases:

>100_bases
AGTTTTTACAAGGGAGTTTTATTTTTATGAATTTATCTGTCTATGTTGCAAGTGCATTTAGTAAGAATAATAAAGGTGGA
AATAAGGCGGGTGTCGTATT

Product: transcription regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MNKKTNACRILDKQKVNYELREYAWSEDSLDALHVAAETGNNPAQIFKTLVLTGDKTGNIVACIPADKTLHLKHLAKISG
NKKCELIAVDTLEKLTGYIRGGCSPIGMKKLFPTFIDNSAESLDTILISAGKRGLQIELAPTDLKKVVRAEFAMITEE

Sequences:

>Translated_158_residues
MNKKTNACRILDKQKVNYELREYAWSEDSLDALHVAAETGNNPAQIFKTLVLTGDKTGNIVACIPADKTLHLKHLAKISG
NKKCELIAVDTLEKLTGYIRGGCSPIGMKKLFPTFIDNSAESLDTILISAGKRGLQIELAPTDLKKVVRAEFAMITEE
>Mature_158_residues
MNKKTNACRILDKQKVNYELREYAWSEDSLDALHVAAETGNNPAQIFKTLVLTGDKTGNIVACIPADKTLHLKHLAKISG
NKKCELIAVDTLEKLTGYIRGGCSPIGMKKLFPTFIDNSAESLDTILISAGKRGLQIELAPTDLKKVVRAEFAMITEE

Specific function: Affects the expression of the receptor, named binding substance, that mediates mating aggregate formation. Could be a regulatory protein that suppresses the function or expression of ebsA and/or ebsMB [H]

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=157, Percent_Identity=39.4904458598726, Blast_Score=105, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17360; Mature: 17360

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKTNACRILDKQKVNYELREYAWSEDSLDALHVAAETGNNPAQIFKTLVLTGDKTGNI
CCCCCCHHEEEHHHHCCHHHHHHCCCCCCCHHEEEEECCCCCHHHHHHHHHCCCCCCCCE
VACIPADKTLHLKHLAKISGNKKCELIAVDTLEKLTGYIRGGCSPIGMKKLFPTFIDNSA
EEEECCCCEEHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCH
ESLDTILISAGKRGLQIELAPTDLKKVVRAEFAMITEE
HHHHHHHEECCCCCEEEEECHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKKTNACRILDKQKVNYELREYAWSEDSLDALHVAAETGNNPAQIFKTLVLTGDKTGNI
CCCCCCHHEEEHHHHCCHHHHHHCCCCCCCHHEEEEECCCCCHHHHHHHHHCCCCCCCCE
VACIPADKTLHLKHLAKISGNKKCELIAVDTLEKLTGYIRGGCSPIGMKKLFPTFIDNSA
EEEECCCCEEHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCH
ESLDTILISAGKRGLQIELAPTDLKKVVRAEFAMITEE
HHHHHHHEECCCCCEEEEECHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8226689; 12663927 [H]