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The map label for this gene is yddE [H]

Identifier: 226223407

GI number: 226223407

Start: 819702

End: 820550

Strand: Reverse

Name: yddE [H]

Synonym: Lm4b_00805

Alternate gene names: 226223407

Gene position: 820550-819702 (Counterclockwise)

Preceding gene: 226223408

Following gene: 226223402

Centisome position: 28.17

GC content: 34.86

Gene sequence:

>849_bases
ATGAATTTATCTGTCTATGTTGCAAGTGCATTTAGTAAGAATAATAAAGGTGGAAATAAGGCGGGTGTCGTATTGAACGA
ACCAACACTCGCCACTGCTCAAAAAATGGCCATTGCAAAACAATTAGGCTATGCGGAAACTGCTTTCCTAACTGAATCTA
ACTGTGCTGATTATAAATTAGAATATTTTACTCCGAAAGAAGAAGTCGATTTATGTGGTCATGCGACAATCGGCACTTTT
GCGATTTTGATGCATTTAAATAAAATTCATAAGAGCCAGTATACAATTGAAACAAATAGCGGTGTACTGACGATTACGAT
AAAAGATGGCACTATCTTCATGGAACAAAATCAACCAACTTTTTATGATACAATTCCCCCCAATAAATTAACAGGTTGTT
TTAACTTAAATTTACTAAATACTAACTACCCTATTAAAATTGTGTCAACTGGTTTAAAAGATATATTAATTCCAATTAAA
AGTAAAGCAGATTTATATGCCCTAGAGCCGAATTTTGAAGAGGTTAAAAAAGTCAGTAAGCATTATGAAGTGGTCGGAAT
GCACCTGTATACTTTTAATGCTGACCAAATTATTTGTCGGAATTTCGCGCCACTATACGACATTAATGAAGAAGCTGCGA
CTGGGACCTCTAATGGTGCTTTGGCCTGTTATCTTTATAAAAATCACTACTTACGAAAAGAAAATTATGTATTTGAACAG
GGCTATTCTTTGCACTCGCCTTCCGAAATCTTCGTTAATCTAGTCATAAGTAATAAAGACGAAATAGAGAAAGTGTATGT
GGGCGGTAAAGGATATTACTGTGAGATGCAGGATTTAAGCATGGAGTAA

Upstream 100 bases:

>100_bases
TACAAATCGAACTAGCCCCTACTGATTTGAAAAAAGTAGTACGTGCGGAGTTTGCGATGATTACGGAAGAATAAAGTTTT
TACAAGGGAGTTTTATTTTT

Downstream 100 bases:

>100_bases
CTCATGGTAAATGTATTCCACTTCACTTCATTTCATTATAATAAAAAAACTGTAGGCAAAGTATTTTTATACTTCGCCTA
CAATCTCAGCCGAAAAGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNLSVYVASAFSKNNKGGNKAGVVLNEPTLATAQKMAIAKQLGYAETAFLTESNCADYKLEYFTPKEEVDLCGHATIGTF
AILMHLNKIHKSQYTIETNSGVLTITIKDGTIFMEQNQPTFYDTIPPNKLTGCFNLNLLNTNYPIKIVSTGLKDILIPIK
SKADLYALEPNFEEVKKVSKHYEVVGMHLYTFNADQIICRNFAPLYDINEEAATGTSNGALACYLYKNHYLRKENYVFEQ
GYSLHSPSEIFVNLVISNKDEIEKVYVGGKGYYCEMQDLSME

Sequences:

>Translated_282_residues
MNLSVYVASAFSKNNKGGNKAGVVLNEPTLATAQKMAIAKQLGYAETAFLTESNCADYKLEYFTPKEEVDLCGHATIGTF
AILMHLNKIHKSQYTIETNSGVLTITIKDGTIFMEQNQPTFYDTIPPNKLTGCFNLNLLNTNYPIKIVSTGLKDILIPIK
SKADLYALEPNFEEVKKVSKHYEVVGMHLYTFNADQIICRNFAPLYDINEEAATGTSNGALACYLYKNHYLRKENYVFEQ
GYSLHSPSEIFVNLVISNKDEIEKVYVGGKGYYCEMQDLSME
>Mature_282_residues
MNLSVYVASAFSKNNKGGNKAGVVLNEPTLATAQKMAIAKQLGYAETAFLTESNCADYKLEYFTPKEEVDLCGHATIGTF
AILMHLNKIHKSQYTIETNSGVLTITIKDGTIFMEQNQPTFYDTIPPNKLTGCFNLNLLNTNYPIKIVSTGLKDILIPIK
SKADLYALEPNFEEVKKVSKHYEVVGMHLYTFNADQIICRNFAPLYDINEEAATGTSNGALACYLYKNHYLRKENYVFEQ
GYSLHSPSEIFVNLVISNKDEIEKVYVGGKGYYCEMQDLSME

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=284, Percent_Identity=26.4084507042254, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI74316009, Length=253, Percent_Identity=27.2727272727273, Blast_Score=75, Evalue=7e-14,
Organism=Escherichia coli, GI1787737, Length=284, Percent_Identity=29.5774647887324, Blast_Score=121, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI17542160, Length=279, Percent_Identity=25.8064516129032, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17542154, Length=279, Percent_Identity=25.8064516129032, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17542158, Length=266, Percent_Identity=25.5639097744361, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17542152, Length=266, Percent_Identity=25.5639097744361, Blast_Score=69, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6321818, Length=242, Percent_Identity=26.0330578512397, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31636; Mature: 31636

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSVYVASAFSKNNKGGNKAGVVLNEPTLATAQKMAIAKQLGYAETAFLTESNCADYKL
CCEEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE
EYFTPKEEVDLCGHATIGTFAILMHLNKIHKSQYTIETNSGVLTITIKDGTIFMEQNQPT
EEECCHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCEEEEECCCCE
FYDTIPPNKLTGCFNLNLLNTNYPIKIVSTGLKDILIPIKSKADLYALEPNFEEVKKVSK
EEECCCCCCEEEEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCHHHHHHHHH
HYEVVGMHLYTFNADQIICRNFAPLYDINEEAATGTSNGALACYLYKNHYLRKENYVFEQ
CEEEEEEEEEEECCCEEEECCCCCCEECCCHHCCCCCCCEEEEEEECCCEECCCCEEEEC
GYSLHSPSEIFVNLVISNKDEIEKVYVGGKGYYCEMQDLSME
CCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCC
>Mature Secondary Structure
MNLSVYVASAFSKNNKGGNKAGVVLNEPTLATAQKMAIAKQLGYAETAFLTESNCADYKL
CCEEEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEE
EYFTPKEEVDLCGHATIGTFAILMHLNKIHKSQYTIETNSGVLTITIKDGTIFMEQNQPT
EEECCHHHHCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCEEEEEEECCEEEEECCCCE
FYDTIPPNKLTGCFNLNLLNTNYPIKIVSTGLKDILIPIKSKADLYALEPNFEEVKKVSK
EEECCCCCCEEEEEEEEEECCCCCEEEEECCCCEEEEEECCCCCEEEECCCHHHHHHHHH
HYEVVGMHLYTFNADQIICRNFAPLYDINEEAATGTSNGALACYLYKNHYLRKENYVFEQ
CEEEEEEEEEEECCCEEEECCCCCCEECCCHHCCCCCCCEEEEEEECCCEECCCCEEEEC
GYSLHSPSEIFVNLVISNKDEIEKVYVGGKGYYCEMQDLSME
CCCCCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]