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The map label for this gene is araQ [H]

Identifier: 226223385

GI number: 226223385

Start: 792707

End: 793582

Strand: Direct

Name: araQ [H]

Synonym: Lm4b_00783

Alternate gene names: 226223385

Gene position: 792707-793582 (Clockwise)

Preceding gene: 226223384

Following gene: 226223386

Centisome position: 27.22

GC content: 35.05

Gene sequence:

>876_bases
ATGAATACCATAAAATTTAAAAAAGGGAGCAAGTCGTTCATTTGGTATATTGCTGTACTTCTAATTAGTTTAGTGACTGT
TTTTCCACTTATTTGGACAGTATCTACTTCCTTTAAACCAACAAGTGAAATTTTAAGTAATAGTATGAATTTAATTCCTA
AAATGTTTACTTGGGATAATTACAAAGATGTTTTTAGTACAACCCCATTTGCCCGCTACCTAGTCAACTCTTTAATACTT
GCAGTTGGTGGTGTGCTCACTAATTTATTCTTCGGGTCATTAGCAGGTTATGCTTTTGCTAAGCTACCTTTTAAAGGGAA
AAAAGGTCTTTTTATGACATTTTTAGGAAGCATGATGATTCCAGCAGTAGTAACAATGATTCCATCTTTCTTAGTATTAA
AGAATTTCCCGTTGATGGGCGGTAATGATATTACTGGTCATGGTGGTATGGGTTTTATAAATACTTACTGGGCAATTTTG
ATTCCAGGAGCCGCTGGGGCATTTTCGATCTTTTTCATGAAACAGTTTTTTGAAACGTTACCAGATGAACTTTCTGAAGC
TGCAAGAATAGACGGTTGTTCGGAGTTTAAAATCTTTTGGAAAATCTATATGCCGCTTGCTAAAACTGCATTAGCTACTC
TTGGAATAATGACATTCCAGGCTGGCTGGAACCAGTTCATGTGGCCATTAATTGTTCTTAATTCACAAAAAATGATGACA
GTTCAAGTAGGACTTGCTTCTTTTCAATATAATGAGAGCGCCAATTATGGGGCTTTAATGGCTGGGACAATTGTTTCTAC
CATTCCAGTATTATTTGTATTTATTTTTGCACAAAAATATTTTGTAGAAGGTATCGCGCATAATGGCGGTAAATAA

Upstream 100 bases:

>100_bases
CTTCCGCAATTTCTTTTGTGTTATTTTTAATCATACTAGTATTTTCGATTATCAATATGCGTGTAAATAAAGAAGATAGG
ACAGCTTAAGGAGGGTTGAT

Downstream 100 bases:

>100_bases
ACCAAAAAAGGAGTGTATAGGATGAAAAAAGTATTGTTAGCAATTCTTAGTATGGTGTTGTTGCTCAGTTTAGCGGCTTG
TGGTGGAAGTTCAGACAGTA

Product: ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MNTIKFKKGSKSFIWYIAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKDVFSTTPFARYLVNSLIL
AVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMIPAVVTMIPSFLVLKNFPLMGGNDITGHGGMGFINTYWAIL
IPGAAGAFSIFFMKQFFETLPDELSEAARIDGCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNSQKMMT
VQVGLASFQYNESANYGALMAGTIVSTIPVLFVFIFAQKYFVEGIAHNGGK

Sequences:

>Translated_291_residues
MNTIKFKKGSKSFIWYIAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKDVFSTTPFARYLVNSLIL
AVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMIPAVVTMIPSFLVLKNFPLMGGNDITGHGGMGFINTYWAIL
IPGAAGAFSIFFMKQFFETLPDELSEAARIDGCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNSQKMMT
VQVGLASFQYNESANYGALMAGTIVSTIPVLFVFIFAQKYFVEGIAHNGGK
>Mature_291_residues
MNTIKFKKGSKSFIWYIAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKDVFSTTPFARYLVNSLIL
AVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMIPAVVTMIPSFLVLKNFPLMGGNDITGHGGMGFINTYWAIL
IPGAAGAFSIFFMKQFFETLPDELSEAARIDGCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNSQKMMT
VQVGLASFQYNESANYGALMAGTIVSTIPVLFVFIFAQKYFVEGIAHNGGK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=281, Percent_Identity=27.7580071174377, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1789860, Length=272, Percent_Identity=27.9411764705882, Blast_Score=121, Evalue=6e-29,
Organism=Escherichia coli, GI1790464, Length=282, Percent_Identity=25.886524822695, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32273; Mature: 32273

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTIKFKKGSKSFIWYIAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
YKDVFSTTPFARYLVNSLILAVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
PAVVTMIPSFLVLKNFPLMGGNDITGHGGMGFINTYWAILIPGAAGAFSIFFMKQFFETL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
PDELSEAARIDGCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNSQKMMT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHEEECCCCEEE
VQVGLASFQYNESANYGALMAGTIVSTIPVLFVFIFAQKYFVEGIAHNGGK
EEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNTIKFKKGSKSFIWYIAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
YKDVFSTTPFARYLVNSLILAVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
PAVVTMIPSFLVLKNFPLMGGNDITGHGGMGFINTYWAILIPGAAGAFSIFFMKQFFETL
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
PDELSEAARIDGCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNSQKMMT
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHEEECCCCEEE
VQVGLASFQYNESANYGALMAGTIVSTIPVLFVFIFAQKYFVEGIAHNGGK
EEEHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]