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The map label for this gene is ugpB [C]

Identifier: 226223386

GI number: 226223386

Start: 793604

End: 794857

Strand: Direct

Name: ugpB [C]

Synonym: Lm4b_00784

Alternate gene names: 226223386

Gene position: 793604-794857 (Clockwise)

Preceding gene: 226223385

Following gene: 226223387

Centisome position: 27.25

GC content: 36.12

Gene sequence:

>1254_bases
ATGAAAAAAGTATTGTTAGCAATTCTTAGTATGGTGTTGTTGCTCAGTTTAGCGGCTTGTGGTGGAAGTTCAGACAGTAG
TAAGGATAAGGACGGAAAAGAAGAAATTGTTATGTGGGGCTCTTGGTCAGGAGATCAAATTAAACAGTTAGAAAAACAAA
TCGATAGCTATAATAAGTCACAAGATAAATATAAAGTAAAATATGTAATGCAAGAAAATGTAGAAGAAAAATTATTAACA
GGAATTGCAGGTGGCGAACTCCCTGATATTATTATGTGGGATCGCTATCAAACAGCTCTTTATGCACCAAAAGGAGTGCT
TGAACCGCTAGATAAACTTGTCAAAGAAGACAACGTGAAGATGGATGATTTTTATGAAGAATCAGTGAAAGAAATGACCT
ATAGTGATAAATTATATGGTTTACCGTTATTGAATGATAATCGAATTCTGTTTTACAATAAAAAATTATTACAAGAAGCT
GGCGTAAAACCACCAACTACGTGGGATGAATTAGCAACTGCTGCGCAAAAAACAACGAAATGGGATGGAAATAAAATGAC
GCAGGCAGGAATGTCACTTCAAGATGTTGGCTTGTTTAACTTGTATTTAATGCAAGCAGGTGGCGAACTAGTAACTTCTG
ACAATAAAGAAACGGCATTCAATTCAGAACAAGGCTTAGAAGTACTAAATTATTGGGATAAAATGCAAAATGATTTAAAA
GTGTACCAACGCGGTTTTGATGATGGCTCCGATGCTTTTGCAGCCGGAAAAGAAGCAATGACATACAACGGTCCGTGGGC
TTTAGCAGATTATAATAAAGTAGAAGACCTTGATTATGGTGTAGTAGAACCACCTAAAGGACCAAATGGCGATAAAGGCG
CTATTATGGGCGGATTTGGATTAGTAATGCCTAAACAAGCCGAACATAAAGACGGCGCATGGGACTTTATGAAGTGGTGG
ACAACGAAACCAGAAAATGGCGTAGAATTTGCCAAAATTAGTGGTTGGTTACCAGCAAACAAAATTGCTGCTGAAGATGA
ATATTTTACGAAAGACCCAAATTATTCTGTTTTTGTAAATACAATGAAATATGCTAAAATTCGTCCAACTGTGGCAGGCT
ATGCAGACGTAGAAGGTTTAGCAATGAAACCTCAATTTGAGAAATTCATGAATGGTAATATTTCAGCTGAAAAAGCTTTA
TCACAAGCTGAAAAAGAAGGAAACCAAATTTTAAAAGAAGAGAGAGATAAATAA

Upstream 100 bases:

>100_bases
TACCATTCCAGTATTATTTGTATTTATTTTTGCACAAAAATATTTTGTAGAAGGTATCGCGCATAATGGCGGTAAATAAA
CCAAAAAAGGAGTGTATAGG

Downstream 100 bases:

>100_bases
ACGATGAAATGGTCCGAATATGCAAATTTAGCTCAACTAAGTTTAGAAAAATTTTATCTTGCCGATACAAAAGAACAATT
TTTAAATAACTTTTATCCGA

Product: sugar ABC transporter (binding protein)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MKKVLLAILSMVLLLSLAACGGSSDSSKDKDGKEEIVMWGSWSGDQIKQLEKQIDSYNKSQDKYKVKYVMQENVEEKLLT
GIAGGELPDIIMWDRYQTALYAPKGVLEPLDKLVKEDNVKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEA
GVKPPTTWDELATAAQKTTKWDGNKMTQAGMSLQDVGLFNLYLMQAGGELVTSDNKETAFNSEQGLEVLNYWDKMQNDLK
VYQRGFDDGSDAFAAGKEAMTYNGPWALADYNKVEDLDYGVVEPPKGPNGDKGAIMGGFGLVMPKQAEHKDGAWDFMKWW
TTKPENGVEFAKISGWLPANKIAAEDEYFTKDPNYSVFVNTMKYAKIRPTVAGYADVEGLAMKPQFEKFMNGNISAEKAL
SQAEKEGNQILKEERDK

Sequences:

>Translated_417_residues
MKKVLLAILSMVLLLSLAACGGSSDSSKDKDGKEEIVMWGSWSGDQIKQLEKQIDSYNKSQDKYKVKYVMQENVEEKLLT
GIAGGELPDIIMWDRYQTALYAPKGVLEPLDKLVKEDNVKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEA
GVKPPTTWDELATAAQKTTKWDGNKMTQAGMSLQDVGLFNLYLMQAGGELVTSDNKETAFNSEQGLEVLNYWDKMQNDLK
VYQRGFDDGSDAFAAGKEAMTYNGPWALADYNKVEDLDYGVVEPPKGPNGDKGAIMGGFGLVMPKQAEHKDGAWDFMKWW
TTKPENGVEFAKISGWLPANKIAAEDEYFTKDPNYSVFVNTMKYAKIRPTVAGYADVEGLAMKPQFEKFMNGNISAEKAL
SQAEKEGNQILKEERDK
>Mature_417_residues
MKKVLLAILSMVLLLSLAACGGSSDSSKDKDGKEEIVMWGSWSGDQIKQLEKQIDSYNKSQDKYKVKYVMQENVEEKLLT
GIAGGELPDIIMWDRYQTALYAPKGVLEPLDKLVKEDNVKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEA
GVKPPTTWDELATAAQKTTKWDGNKMTQAGMSLQDVGLFNLYLMQAGGELVTSDNKETAFNSEQGLEVLNYWDKMQNDLK
VYQRGFDDGSDAFAAGKEAMTYNGPWALADYNKVEDLDYGVVEPPKGPNGDKGAIMGGFGLVMPKQAEHKDGAWDFMKWW
TTKPENGVEFAKISGWLPANKIAAEDEYFTKDPNYSVFVNTMKYAKIRPTVAGYADVEGLAMKPQFEKFMNGNISAEKAL
SQAEKEGNQILKEERDK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=412, Percent_Identity=24.7572815533981, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 46855; Mature: 46855

Theoretical pI: Translated: 4.58; Mature: 4.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKVLLAILSMVLLLSLAACGGSSDSSKDKDGKEEIVMWGSWSGDQIKQLEKQIDSYNKS
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCC
QDKYKVKYVMQENVEEKLLTGIAGGELPDIIMWDRYQTALYAPKGVLEPLDKLVKEDNVK
CHHEEEHHHHHHCHHHHHHHHCCCCCCCCEEEECCHHHHHCCCCHHHHHHHHHHHHCCCC
MDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEAGVKPPTTWDELATAAQKTTK
HHHHHHHHHHHHHHCCCEECCEEECCCEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHCC
WDGNKMTQAGMSLQDVGLFNLYLMQAGGELVTSDNKETAFNSEQGLEVLNYWDKMQNDLK
CCCCHHHHHCCCHHHHHHHHEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
VYQRGFDDGSDAFAAGKEAMTYNGPWALADYNKVEDLDYGVVEPPKGPNGDKGAIMGGFG
HHHCCCCCCCHHHHCCCCCEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
LVMPKQAEHKDGAWDFMKWWTTKPENGVEFAKISGWLPANKIAAEDEYFTKDPNYSVFVN
EECCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
TMKYAKIRPTVAGYADVEGLAMKPQFEKFMNGNISAEKALSQAEKEGNQILKEERDK
EEHHHEECCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKVLLAILSMVLLLSLAACGGSSDSSKDKDGKEEIVMWGSWSGDQIKQLEKQIDSYNKS
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCC
QDKYKVKYVMQENVEEKLLTGIAGGELPDIIMWDRYQTALYAPKGVLEPLDKLVKEDNVK
CHHEEEHHHHHHCHHHHHHHHCCCCCCCCEEEECCHHHHHCCCCHHHHHHHHHHHHCCCC
MDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEAGVKPPTTWDELATAAQKTTK
HHHHHHHHHHHHHHCCCEECCEEECCCEEEEECHHHHHHCCCCCCCCHHHHHHHHHHHCC
WDGNKMTQAGMSLQDVGLFNLYLMQAGGELVTSDNKETAFNSEQGLEVLNYWDKMQNDLK
CCCCHHHHHCCCHHHHHHHHEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHH
VYQRGFDDGSDAFAAGKEAMTYNGPWALADYNKVEDLDYGVVEPPKGPNGDKGAIMGGFG
HHHCCCCCCCHHHHCCCCCEEECCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
LVMPKQAEHKDGAWDFMKWWTTKPENGVEFAKISGWLPANKIAAEDEYFTKDPNYSVFVN
EECCCCCCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEEE
TMKYAKIRPTVAGYADVEGLAMKPQFEKFMNGNISAEKALSQAEKEGNQILKEERDK
EEHHHEECCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA