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The map label for this gene is ycdJ [C]

Identifier: 226223370

GI number: 226223370

Start: 778480

End: 779316

Strand: Direct

Name: ycdJ [C]

Synonym: Lm4b_00768

Alternate gene names: 226223370

Gene position: 778480-779316 (Clockwise)

Preceding gene: 226223369

Following gene: 226223371

Centisome position: 26.73

GC content: 40.02

Gene sequence:

>837_bases
ATGAGCGTTTTAAACATTGAAGGAGCAAAATTATCGTATCAGAAAGTCGGACAAGGTCCTATTCTTATTTTTATACCGGG
AGCAAATGGAACTGGAGATATCTTTTTACCACTGGCAGAGCAATTGAAAACATCTTTTTCTGTTGTAATGGTAGATCGTC
GTGGGTATGGGGACAGTGAGTTAACAGCAGCTATACCGGAGCGCGCTAGTCATGCATATGATGATTACCGAGTGACTAGA
GATGCTGCTGATATTGCTGCACTCGCAAAAGCGTTAAGCGACGAGCCTGTTTATATTTTAGGGTCAAGCTCTGGTTCGAT
TGTTGCTATGCATGTCTTGAAAAATCACCCAGAAGTTGTTAAAAAAATAGCCTTTCATGAGCCACCAATCAATACATTCT
TACCAGATTCGGAGATGTGGCAAGAAGCGAATGAAAAGATTGTACAAACTGCCCTAACTAAAAATATGGCTGAAGCAATG
CAACTTTTTGGCGAAACACTTCATATTGCCCCCATTGACGCAGAAAGCATGTCGAAACCAGCCGTAACAATAGACGAAGT
GACAAAAGATTCAACCACGCAACAAATGAAATACTGGTTCACTTATGAAATCCGCCAATATACTAGCTCTAATATATCTT
TAGACGATTTCAAACCATATGTTCATCAGATTACGTTACTTAATGGTACCGATTCAAAGGGCTCATTCCCACAAGATGTT
AATGCCTTTATAGCCAAACAGCTCGGATTAACTATCGTGGATATTCCAGGCGGTCATTTAGGTTATATTCAAAAACCAGC
CGGATTTGCTAAAGTACTTTTGTCAATCTGGGGATAA

Upstream 100 bases:

>100_bases
CATAACAGCTTTCTCCTTTCGTAACCACGGTTACAGACGAAATCACAAAAGCTATCTATACTAAAGTTAGATTTTAGATA
AATTAGAGGAGATGGTCATA

Downstream 100 bases:

>100_bases
AAATAAAAAATTCTGCTAAAGGTTAAATTTAGCAGAATTTTTTTGATGCAGTCGTAATTGCTATTTAAAAGAAAGTGGTC
TATGCTTATCGTTAAAAGTA

Product: a haloacetate dehalogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MSVLNIEGAKLSYQKVGQGPILIFIPGANGTGDIFLPLAEQLKTSFSVVMVDRRGYGDSELTAAIPERASHAYDDYRVTR
DAADIAALAKALSDEPVYILGSSSGSIVAMHVLKNHPEVVKKIAFHEPPINTFLPDSEMWQEANEKIVQTALTKNMAEAM
QLFGETLHIAPIDAESMSKPAVTIDEVTKDSTTQQMKYWFTYEIRQYTSSNISLDDFKPYVHQITLLNGTDSKGSFPQDV
NAFIAKQLGLTIVDIPGGHLGYIQKPAGFAKVLLSIWG

Sequences:

>Translated_278_residues
MSVLNIEGAKLSYQKVGQGPILIFIPGANGTGDIFLPLAEQLKTSFSVVMVDRRGYGDSELTAAIPERASHAYDDYRVTR
DAADIAALAKALSDEPVYILGSSSGSIVAMHVLKNHPEVVKKIAFHEPPINTFLPDSEMWQEANEKIVQTALTKNMAEAM
QLFGETLHIAPIDAESMSKPAVTIDEVTKDSTTQQMKYWFTYEIRQYTSSNISLDDFKPYVHQITLLNGTDSKGSFPQDV
NAFIAKQLGLTIVDIPGGHLGYIQKPAGFAKVLLSIWG
>Mature_277_residues
SVLNIEGAKLSYQKVGQGPILIFIPGANGTGDIFLPLAEQLKTSFSVVMVDRRGYGDSELTAAIPERASHAYDDYRVTRD
AADIAALAKALSDEPVYILGSSSGSIVAMHVLKNHPEVVKKIAFHEPPINTFLPDSEMWQEANEKIVQTALTKNMAEAMQ
LFGETLHIAPIDAESMSKPAVTIDEVTKDSTTQQMKYWFTYEIRQYTSSNISLDDFKPYVHQITLLNGTDSKGSFPQDVN
AFIAKQLGLTIVDIPGGHLGYIQKPAGFAKVLLSIWG

Specific function: Unknown

COG id: COG0596

COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: NA

Molecular weight: Translated: 30465; Mature: 30334

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVLNIEGAKLSYQKVGQGPILIFIPGANGTGDIFLPLAEQLKTSFSVVMVDRRGYGDSE
CCEEECCCCEEEHHHCCCCCEEEEEECCCCCCCEEEHHHHHHCCCEEEEEEECCCCCCCH
LTAAIPERASHAYDDYRVTRDAADIAALAKALSDEPVYILGSSSGSIVAMHVLKNHPEVV
HHHHHHHHHHHCHHHHEEHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHCCHHHH
KKIAFHEPPINTFLPDSEMWQEANEKIVQTALTKNMAEAMQLFGETLHIAPIDAESMSKP
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHCCCC
AVTIDEVTKDSTTQQMKYWFTYEIRQYTSSNISLDDFKPYVHQITLLNGTDSKGSFPQDV
CEEHHHHCCCCCHHHEEEEEEEEEEHHCCCCCCHHHCCCCEEEEEEEECCCCCCCCCHHH
NAFIAKQLGLTIVDIPGGHLGYIQKPAGFAKVLLSIWG
HHHHHHHHCCEEEECCCCCCCCEECCHHHHHHHHHHCC
>Mature Secondary Structure 
SVLNIEGAKLSYQKVGQGPILIFIPGANGTGDIFLPLAEQLKTSFSVVMVDRRGYGDSE
CEEECCCCEEEHHHCCCCCEEEEEECCCCCCCEEEHHHHHHCCCEEEEEEECCCCCCCH
LTAAIPERASHAYDDYRVTRDAADIAALAKALSDEPVYILGSSSGSIVAMHVLKNHPEVV
HHHHHHHHHHHCHHHHEEHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEHHCCHHHH
KKIAFHEPPINTFLPDSEMWQEANEKIVQTALTKNMAEAMQLFGETLHIAPIDAESMSKP
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHCCCC
AVTIDEVTKDSTTQQMKYWFTYEIRQYTSSNISLDDFKPYVHQITLLNGTDSKGSFPQDV
CEEHHHHCCCCCHHHEEEEEEEEEEHHCCCCCCHHHCCCCEEEEEEEECCCCCCCCCHHH
NAFIAKQLGLTIVDIPGGHLGYIQKPAGFAKVLLSIWG
HHHHHHHHCCEEEECCCCCCCCEECCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]