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The map label for this gene is flgD

Identifier: 226223327

GI number: 226223327

Start: 738558

End: 738980

Strand: Direct

Name: flgD

Synonym: Lm4b_00724

Alternate gene names: 226223327

Gene position: 738558-738980 (Clockwise)

Preceding gene: 226223326

Following gene: 226223328

Centisome position: 25.36

GC content: 40.66

Gene sequence:

>423_bases
TTGGACGGAATTAGTAGTTTATCAGGAGCCGGTCAGGATACAAATAATGTAGTAACATCCAGCGTATCCAAAACCCTTGG
CAAAGATGACTTCATGAAACTATTTTTAACAAGTTTGCAATACCAAGACCCATCGAGCCCGCTTGATACGAATGAAATGA
TGTCGCAAATGGCGCAACTTTCCTTAATGGAACAAGTTGCCAATATGACCACTGCCGTAGATAAGCTTTCTGAACAAGCG
CAAAACTCCGCCTTGCAATCCGCGGTTAATTTCATCGGTAAAGATATAAAAGGTGTTTCGCTGAACGGCGAAGTAATTAG
TGGAAAAGTCGAAAGCGTTCAACAAACGACAAACGGCGTCATGCTGAAATTAAAAGATAACGATAGCCTCGTGCCAATGA
CATATGTAACAGAAATTAATTAA

Upstream 100 bases:

>100_bases
GGTCGACACCAAGGTGAATCCAAAAAAGAAAAAGAACGCGAAAATCCACATCAGGAAAGAGCTAAACAAGAAGCATTTGA
TTTAGAGGAGGAGACGTAAT

Downstream 100 bases:

>100_bases
AAATTTGGGAGTGTGAATTATGAATCAAACTATGTATACAGCTATTTCTGGGATGAATGCGTTCCAACAAGCATTATCGG
TAACATCAAATAATATTGCC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: ORF 8 [H]

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MDGISSLSGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQA
QNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPMTYVTEIN

Sequences:

>Translated_140_residues
MDGISSLSGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQA
QNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPMTYVTEIN
>Mature_140_residues
MDGISSLSGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQA
QNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGVMLKLKDNDSLVPMTYVTEIN

Specific function: Required For Flagellar Hook Formation. May Act As A Scaffolding Protein. [C]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 15017; Mature: 15017

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGISSLSGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQL
CCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
SLMEQVANMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHHCCCE
MLKLKDNDSLVPMTYVTEIN
EEEECCCCCEECEEEEEECC
>Mature Secondary Structure
MDGISSLSGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDPSSPLDTNEMMSQMAQL
CCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
SLMEQVANMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLNGEVISGKVESVQQTTNGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCHHHHHHHHCCCE
MLKLKDNDSLVPMTYVTEIN
EEEECCCCCEECEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1828465; 9384377 [H]