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The map label for this gene is idi [C]

Identifier: 226222995

GI number: 226222995

Start: 397553

End: 398062

Strand: Direct

Name: idi [C]

Synonym: Lm4b_00387

Alternate gene names: 226222995

Gene position: 397553-398062 (Clockwise)

Preceding gene: 226222994

Following gene: 226222996

Centisome position: 13.65

GC content: 39.61

Gene sequence:

>510_bases
GTGGAAGAATGGGATTTGCTAAATGAGAATCGTGAATTAACTGGGAAAACACATATCCGCGGTGAAAAACTAGCGCCCGG
AGAACTTCATTTGGTTGTTCACGTATGTATTTTTAACGAAAAAGGGCAACTTTTAATCCAAAAGCGCCAAAAAGATAAAG
AAGGTTGGCCGAATTATTGGGATCTTTCTGCGGCGGGTTCTGCGCTAAAAGGCGAAACAAGTCGCCAAGCTGCTGAACGA
GAAGTGCAAGAAGAACTAGGGATTACAATTGATTTAAGTAACACCCGTGCCAAATTCAGTTACCATTTCGAAGCGGGATT
TGATGATTATTGGTTTATTACGAAAGACGTGGAACTTAGCGACTTAACTTTACAAAAAGAAGAAGTAGCAGATGCCCGTT
TTGTCACTAAAGAAGAGTTAGAAGCATTAAGAAGTTCGGGCGAATTCATTCCATACTTCTTTTTAAATCAGCTTTTTGAC
CTGAAAAACGCCACATCTATCCATTTTTAA

Upstream 100 bases:

>100_bases
AGAAATTTTTGGAGAAAAACTACTGTAGTCTAAGGTTCGCGAGCCTTAGACTTTTTTTGTATAATGAAGGTAAGTCAATG
ATTAGAAGGAGCCGATTTTA

Downstream 100 bases:

>100_bases
CGAATATAGCTAAATTTCCACTTAACAAATTCGTTTCCTACACTTATAATAGTACAGAGACACGAGAAAACTCCAATTAG
AAAGCGAGTGGTAATATGGG

Product: different proteins

Products: Dimethylallyl diphosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MEEWDLLNENRELTGKTHIRGEKLAPGELHLVVHVCIFNEKGQLLIQKRQKDKEGWPNYWDLSAAGSALKGETSRQAAER
EVQEELGITIDLSNTRAKFSYHFEAGFDDYWFITKDVELSDLTLQKEEVADARFVTKEELEALRSSGEFIPYFFLNQLFD
LKNATSIHF

Sequences:

>Translated_169_residues
MEEWDLLNENRELTGKTHIRGEKLAPGELHLVVHVCIFNEKGQLLIQKRQKDKEGWPNYWDLSAAGSALKGETSRQAAER
EVQEELGITIDLSNTRAKFSYHFEAGFDDYWFITKDVELSDLTLQKEEVADARFVTKEELEALRSSGEFIPYFFLNQLFD
LKNATSIHF
>Mature_169_residues
MEEWDLLNENRELTGKTHIRGEKLAPGELHLVVHVCIFNEKGQLLIQKRQKDKEGWPNYWDLSAAGSALKGETSRQAAER
EVQEELGITIDLSNTRAKFSYHFEAGFDDYWFITKDVELSDLTLQKEEVADARFVTKEELEALRSSGEFIPYFFLNQLFD
LKNATSIHF

Specific function: Catalyzes The 1,3-Allylic Rearrangement Of The Homoallylic Substrate Isopentenyl (Ipp) To Its Highly Electrophilic Allylic Isomer, Dimethylallyl Diphosphate (Dmapp). [C]

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 5.3.3.2 [C]

Molecular weight: Translated: 19571; Mature: 19571

Theoretical pI: Translated: 4.66; Mature: 4.66

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEWDLLNENRELTGKTHIRGEKLAPGELHLVVHVCIFNEKGQLLIQKRQKDKEGWPNYW
CCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEECCCCCEEHHHHHCCCCCCCCEE
DLSAAGSALKGETSRQAAEREVQEELGITIDLSNTRAKFSYHFEAGFDDYWFITKDVELS
ECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCEEEEEEEEECCCCCEEEEECCCCCC
DLTLQKEEVADARFVTKEELEALRSSGEFIPYFFLNQLFDLKNATSIHF
CCEECHHHHHHHHHCCHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEEWDLLNENRELTGKTHIRGEKLAPGELHLVVHVCIFNEKGQLLIQKRQKDKEGWPNYW
CCCCCCCCCCCCCCCCEECCCCCCCCCEEEEEEEEEEECCCCCEEHHHHHCCCCCCCCEE
DLSAAGSALKGETSRQAAEREVQEELGITIDLSNTRAKFSYHFEAGFDDYWFITKDVELS
ECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCEEEEEEEEECCCCCEEEEECCCCCC
DLTLQKEEVADARFVTKEELEALRSSGEFIPYFFLNQLFDLKNATSIHF
CCEECHHHHHHHHHCCHHHHHHHHHCCCEEHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): 0.036 {isopentenyl} [C]

Substrates: Isopentenyl diphosphate [C]

Specific reaction: Isopentenyl diphosphate --> Dimethylallyl diphosphate [C]

General reaction: Intramolecular oxidoreduction; Isomerization [C]

Inhibitor: Iodoacetamide; PCMB [C]

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]