Click here to switch to the map view.

The map label for this gene is 226222952

Identifier: 226222952

GI number: 226222952

Start: 347725

End: 348627

Strand: Direct

Name: 226222952

Synonym: Lm4b_00344

Alternate gene names: NA

Gene position: 347725-348627 (Clockwise)

Preceding gene: 226222951

Following gene: 226222953

Centisome position: 11.94

GC content: 33.55

Gene sequence:

>903_bases
ATGGGTTCATATGGCGAATTGATTCGGGAAATACGGCTATCTAAAGGTTTGACTCAAAAAGAGGTATACACAGGAATTAT
ATCTAGGTCTTATGCAATCGGATTTGAAAAAGGAAAACACGAGATTACTTTGAGTTTGTTTGAAGAAATTTTAAAGCGGA
TCATGGTTCCTTTAGATGAATTCTTTTTTATTTACAGAGACTTTTCTTCGACAGAGGATGATAGTTTTTGGATTGATTTC
GTCGAGCTATCAGGTAAAAATGATGTTGTAGGGATGCAGGCGTTGCTAGATAAAATAACTTTAGAGCGAACGGAGCAGAC
AGAAGTTAGAAAAGCGATACTTCATACGAGAATTCAAACGATTAATCATTATTTGCGTACGAATGTGTTTGATGAATCGA
ATATTTCTGATGAATATAAAAAAATTATTCATGACTATCTTTGGAAAATGCAGACGTGGACTTTAGAAGAGGTTCGTATT
TTTTCCAACGGCATATCATTTTTTGAGGAAGAAGTACAAATTCACTTTTATCAAATTATGTTGAAATCGTATGAAAAGTA
TAGGTACTATGATAGAGGAAGACTGCTATTTTGCCATCTATTTGCTAATCTGACAGATGAACTCATCATACAGAATAAAA
TCAATTATGCGAATCTAGTACTCGAAAAATTAAAAGAAGCATCTGAAACAAGTGGTAGTTTTAACAGTGCTTTTTATCGA
ATAGTAGCCAATTATTATCAAGGGGCTATTTGGATGAAAGAAGGCGAAGTGGAAAAGGGCTATCGCCAAGCCAAAAGAGC
CATTCAAACATGGAAAGAACTGCATTATGAAGCAATAGCAGATTTGTATAGCGTGGTATTAAAACAATTTTTAGAAAAAG
AAAATATCCAAGTAGAAGATTAA

Upstream 100 bases:

>100_bases
AATGATTCCTAAATTGTTTGGAGTAGAGAAATTAAAGCATAGACATAGATACTGCATTCCGACTTTTTGAAATGGAAGAA
CTTAATTAGGGGGATATCAT

Downstream 100 bases:

>100_bases
CTATCCGAAGAATTTCTATTTAAAAAACACTAAAATGGAGTCGTTTTAGTGTTTTTTTGTTTGTGGTAAAGATGTTTTAT
GTACTATATATAGCACTATT

Product: transcriptional regulator

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcription Regulator; Rgg/GadR/MutR Family Transcriptional Activator; MutR Family Transcriptional Regulator

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MGSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFFIYRDFSSTEDDSFWIDF
VELSGKNDVVGMQALLDKITLERTEQTEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRI
FSNGISFFEEEVQIHFYQIMLKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYANLVLEKLKEASETSGSFNSAFYR
IVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHYEAIADLYSVVLKQFLEKENIQVED

Sequences:

>Translated_300_residues
MGSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFFIYRDFSSTEDDSFWIDF
VELSGKNDVVGMQALLDKITLERTEQTEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRI
FSNGISFFEEEVQIHFYQIMLKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYANLVLEKLKEASETSGSFNSAFYR
IVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHYEAIADLYSVVLKQFLEKENIQVED
>Mature_299_residues
GSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDEFFFIYRDFSSTEDDSFWIDFV
ELSGKNDVVGMQALLDKITLERTEQTEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRIF
SNGISFFEEEVQIHFYQIMLKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYANLVLEKLKEASETSGSFNSAFYRI
VANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHYEAIADLYSVVLKQFLEKENIQVED

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35703; Mature: 35572

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDE
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHHHHHHHHHHCHHH
FFFIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQTEVRKAILHTRIQT
HHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
INHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRIFSNGISFFEEEVQIHFYQIM
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYANLVLEKLKEASETSGSFNSAFYR
HHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
IVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHYEAIADLYSVVLKQFLEKENIQVED
HHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITLSLFEEILKRIMVPLDE
CCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHHHHHHHHHHCHHH
FFFIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLERTEQTEVRKAILHTRIQT
HHHHHHCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
INHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRIFSNGISFFEEEVQIHFYQIM
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYANLVLEKLKEASETSGSFNSAFYR
HHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
IVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHYEAIADLYSVVLKQFLEKENIQVED
HHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA