| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is nrdD [H]
Identifier: 226222915
GI number: 226222915
Start: 309853
End: 312003
Strand: Direct
Name: nrdD [H]
Synonym: Lm4b_00307
Alternate gene names: 226222915
Gene position: 309853-312003 (Clockwise)
Preceding gene: 226222913
Following gene: 226222916
Centisome position: 10.64
GC content: 39.7
Gene sequence:
>2151_bases ATGTACGTGGAACAACTTAATGAACAAATGGTAATAAAAAGGGACGGCCGTAAAGCAAACTTTGATTTAATTAAAATTCG TAATGCCGTTGAAGCATCTATGAAAGCAATTAATTTAGAGGACGAGACTTTCTTAGAAGAGATTTTGCTTGAGGTTGTAA GTGAATTACCTAACAAGGCAGATATGACCATCGATGAAATCCAGCATTGCGTCGAAAATACTTTAATGAAATCGACGTAT CCTGATGTAGCGAGGGCTTACATAGAATACCGCCATGATCGCGACCATGAGCGTGAAAACATCACAGATATGCACAAAAG CGTAGAAAAGCTACTACAAAAAGACAAAACAGTAGTAAACGAAAATGCCAACAAAGACGCGACTGTCTTTAATACGCAAC GCGATTTGACAGCAGGAGCCGTAGCAAAAAGTTACGCATTAAAATACATGCTACCAAAACACGTATCCAACGCTCATTTA AAAGGGGAAATTCATTTTCACGATTTAGATTACAGCCCATACCATGCGATGACCAACTGTTGTTTAATCGACATCGAAGG AATGCTGTCAAAAGGATTTACGATTGGTAATGCCAACGTAGAAAGCCCGAAATCTATCCAAACTGCTACCGCACAAATTG CTCAAATAATCGCAAATGTAGCAAGTTCGCAGTACGGCGGCTGTTCGGTTGACCGTATTGATGAAGTTTTATCCGTTTAC GCGCGTTTGAACTTTGAAAAACATAAAAAAGATGCGATGGAATGGGTCGTTCCAGAAAAACAAGAAGGCTATGCAGCGGA GAAAACACGCAAAGATATTTACGATGCGATGCAAAGCTTAGAATACGAAATCAACACATTATATACAAGTAACGGCCAAA CACCGTTCGTAACACTAGGCTTCGGTCTTGGTGAAGATTGGTTTGCCCGTGAAATTCAAAAAGCCATCCTAAAAGTGCGT ATTGGTGGGGTTGGTAAAGATAAACACACGGCTATTTTCCCGAAATTAGTATTTTCAATTCGCCGTGGAACTAATTTAAA TGCAGAAGATCCTAATTATGACATTAAACAATTGGCGCTAGAGTGTTCCTCGAAACGGATGTATCCAGATGTACTCAACT ACGATTCACTCGTTCGCTTAACAGGCGATTTCAAAGTACCAATGGGCTGTCGTTCGTTCTTGCCAGCTTGGGAAAACGAA AACGGCGAACACGTGAACGCGGGAAGAAACAATCTTGGTGTTGTAACACTTAACATTCCACGTATCGCTATCCAAAGTGG TGGGGACAAAGAACGTTTCTGGGAAATTTTCCACGAACGCATGAAAACAGTCAAAGATGCGCTACTTTTCCGTTTAAACC GCGTACGTCAAGCACGTCCAGAAAATGCACCAATTTTATATAAATACGGAGCATTTGGCAAACGACTACAAGATGGCGAA AATGTTGATCAACTTTTCAATAAAGAACGTTCTACTATCTCTATCGGCTATATCGGTCTTTATGAAGCAGCGACTGTATT TTACGGCGGTGAATGGGAAGGCGACAAAGAAGCAAAAAACTTCACGCTTGATATCTTGAAAGAACTAAAAGGTTATGCGG ACAACTGGAAAGATGAATATGGCTACTGGTTTAGCGTATATTCGACTCCAAGTGAAAGCTTAACTGACCGTTTTAACCGT TTAGACAAAGAAAAATATGGTGTAATTAAAGACATCACAGATAAAGACTACTACCAAAACTCTTTCCACTATGATGTTCG TAAAAAAATTACCCCATTTGAAAAAATTGATTTTGAAAAAGATTATCCAGAATTTTGCTCTGGCGGATTCATTCATTATT GTGAATATCCAAAAATGGTTCACAATACGAAAGCACTTGAGGCTGTATGGGATTACTCCTATGATCGTGTAGCTTACCTT GGTACAAATACACCAATCGATAAATGTTACGAATGTAATTTTGAAGGTGAATTTGTTCCTACAGAAGAAGGCTTCAAATG CCCAAGCTGTGGCAACACCGACCCCGAAAAAGCAGATGTTGTAAAACGTACTTGTGGCTATTTAGGCAACCCAATGAAAC GTCCAATGGTTCATGGACGTCACGTAGAAATTAGCAATCGCGTGAAACATATGGAGAACTTAGGTGAATAA
Upstream 100 bases:
>100_bases AGTCCCAATTCCGGAAATTCCTCAGATATCATTACAATAAAACTTCATCTTGTGTTATATTATTAAAGCAGACACAATAT ATAGTTAGTGGGGGATTATC
Downstream 100 bases:
>100_bases TCCAAAACCGTGTGAATGGAAGTCGAATGAATTATCCAGAGGGTATATCGCCGACTATAAGGCATTCAACTTTGTCGACG GAGAGGGCGTCCGGTGCAGT
Product: anaerobic ribonucleoside triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 716; Mature: 716
Protein sequence:
>716_residues MYVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMTIDEIQHCVENTLMKSTY PDVARAYIEYRHDRDHERENITDMHKSVEKLLQKDKTVVNENANKDATVFNTQRDLTAGAVAKSYALKYMLPKHVSNAHL KGEIHFHDLDYSPYHAMTNCCLIDIEGMLSKGFTIGNANVESPKSIQTATAQIAQIIANVASSQYGGCSVDRIDEVLSVY ARLNFEKHKKDAMEWVVPEKQEGYAAEKTRKDIYDAMQSLEYEINTLYTSNGQTPFVTLGFGLGEDWFAREIQKAILKVR IGGVGKDKHTAIFPKLVFSIRRGTNLNAEDPNYDIKQLALECSSKRMYPDVLNYDSLVRLTGDFKVPMGCRSFLPAWENE NGEHVNAGRNNLGVVTLNIPRIAIQSGGDKERFWEIFHERMKTVKDALLFRLNRVRQARPENAPILYKYGAFGKRLQDGE NVDQLFNKERSTISIGYIGLYEAATVFYGGEWEGDKEAKNFTLDILKELKGYADNWKDEYGYWFSVYSTPSESLTDRFNR LDKEKYGVIKDITDKDYYQNSFHYDVRKKITPFEKIDFEKDYPEFCSGGFIHYCEYPKMVHNTKALEAVWDYSYDRVAYL GTNTPIDKCYECNFEGEFVPTEEGFKCPSCGNTDPEKADVVKRTCGYLGNPMKRPMVHGRHVEISNRVKHMENLGE
Sequences:
>Translated_716_residues MYVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMTIDEIQHCVENTLMKSTY PDVARAYIEYRHDRDHERENITDMHKSVEKLLQKDKTVVNENANKDATVFNTQRDLTAGAVAKSYALKYMLPKHVSNAHL KGEIHFHDLDYSPYHAMTNCCLIDIEGMLSKGFTIGNANVESPKSIQTATAQIAQIIANVASSQYGGCSVDRIDEVLSVY ARLNFEKHKKDAMEWVVPEKQEGYAAEKTRKDIYDAMQSLEYEINTLYTSNGQTPFVTLGFGLGEDWFAREIQKAILKVR IGGVGKDKHTAIFPKLVFSIRRGTNLNAEDPNYDIKQLALECSSKRMYPDVLNYDSLVRLTGDFKVPMGCRSFLPAWENE NGEHVNAGRNNLGVVTLNIPRIAIQSGGDKERFWEIFHERMKTVKDALLFRLNRVRQARPENAPILYKYGAFGKRLQDGE NVDQLFNKERSTISIGYIGLYEAATVFYGGEWEGDKEAKNFTLDILKELKGYADNWKDEYGYWFSVYSTPSESLTDRFNR LDKEKYGVIKDITDKDYYQNSFHYDVRKKITPFEKIDFEKDYPEFCSGGFIHYCEYPKMVHNTKALEAVWDYSYDRVAYL GTNTPIDKCYECNFEGEFVPTEEGFKCPSCGNTDPEKADVVKRTCGYLGNPMKRPMVHGRHVEISNRVKHMENLGE >Mature_716_residues MYVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKADMTIDEIQHCVENTLMKSTY PDVARAYIEYRHDRDHERENITDMHKSVEKLLQKDKTVVNENANKDATVFNTQRDLTAGAVAKSYALKYMLPKHVSNAHL KGEIHFHDLDYSPYHAMTNCCLIDIEGMLSKGFTIGNANVESPKSIQTATAQIAQIIANVASSQYGGCSVDRIDEVLSVY ARLNFEKHKKDAMEWVVPEKQEGYAAEKTRKDIYDAMQSLEYEINTLYTSNGQTPFVTLGFGLGEDWFAREIQKAILKVR IGGVGKDKHTAIFPKLVFSIRRGTNLNAEDPNYDIKQLALECSSKRMYPDVLNYDSLVRLTGDFKVPMGCRSFLPAWENE NGEHVNAGRNNLGVVTLNIPRIAIQSGGDKERFWEIFHERMKTVKDALLFRLNRVRQARPENAPILYKYGAFGKRLQDGE NVDQLFNKERSTISIGYIGLYEAATVFYGGEWEGDKEAKNFTLDILKELKGYADNWKDEYGYWFSVYSTPSESLTDRFNR LDKEKYGVIKDITDKDYYQNSFHYDVRKKITPFEKIDFEKDYPEFCSGGFIHYCEYPKMVHNTKALEAVWDYSYDRVAYL GTNTPIDKCYECNFEGEFVPTEEGFKCPSCGNTDPEKADVVKRTCGYLGNPMKRPMVHGRHVEISNRVKHMENLGE
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=705, Percent_Identity=53.6170212765957, Blast_Score=798, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 82223; Mature: 82223
Theoretical pI: Translated: 5.96; Mature: 5.96
Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKA CCHHHHCCCEEEEECCCCCCCHHEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC DMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVEKLLQKDKTVVN CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHC ENANKDATVFNTQRDLTAGAVAKSYALKYMLPKHVSNAHLKGEIHFHDLDYSPYHAMTNC CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHCE CLIDIEGMLSKGFTIGNANVESPKSIQTATAQIAQIIANVASSQYGGCSVDRIDEVLSVY EEEEEHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH ARLNFEKHKKDAMEWVVPEKQEGYAAEKTRKDIYDAMQSLEYEINTLYTSNGQTPFVTLG HHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCEEEEE FGLGEDWFAREIQKAILKVRIGGVGKDKHTAIFPKLVFSIRRGTNLNAEDPNYDIKQLAL CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH ECSSKRMYPDVLNYDSLVRLTGDFKVPMGCRSFLPAWENENGEHVNAGRNNLGVVTLNIP HHHCCCCCCHHCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCEECCCCCCEEEEEEECC RIAIQSGGDKERFWEIFHERMKTVKDALLFRLNRVRQARPENAPILYKYGAFGKRLQDGE EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHCCCCC NVDQLFNKERSTISIGYIGLYEAATVFYGGEWEGDKEAKNFTLDILKELKGYADNWKDEY CHHHHHCCCCCEEEEEEEEHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC GYWFSVYSTPSESLTDRFNRLDKEKYGVIKDITDKDYYQNSFHYDVRKKITPFEKIDFEK CEEEEEECCCCHHHHHHHHHHCHHHCCCHHCCCCCHHHCCCCCCHHHHHCCCHHHCCCCC DYPEFCSGGFIHYCEYPKMVHNTKALEAVWDYSYDRVAYLGTNTPIDKCYECNFEGEFVP CCHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHEECCCCCCCCC TEEGFKCPSCGNTDPEKADVVKRTCGYLGNPMKRPMVHGRHVEISNRVKHMENLGE CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCEEEHHHHHHHHHHCCC >Mature Secondary Structure MYVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETFLEEILLEVVSELPNKA CCHHHHCCCEEEEECCCCCCCHHEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC DMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENITDMHKSVEKLLQKDKTVVN CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCHHHHC ENANKDATVFNTQRDLTAGAVAKSYALKYMLPKHVSNAHLKGEIHFHDLDYSPYHAMTNC CCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHCE CLIDIEGMLSKGFTIGNANVESPKSIQTATAQIAQIIANVASSQYGGCSVDRIDEVLSVY EEEEEHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH ARLNFEKHKKDAMEWVVPEKQEGYAAEKTRKDIYDAMQSLEYEINTLYTSNGQTPFVTLG HHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCEEEEEEEECCCCCCEEEEE FGLGEDWFAREIQKAILKVRIGGVGKDKHTAIFPKLVFSIRRGTNLNAEDPNYDIKQLAL CCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH ECSSKRMYPDVLNYDSLVRLTGDFKVPMGCRSFLPAWENENGEHVNAGRNNLGVVTLNIP HHHCCCCCCHHCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCEECCCCCCEEEEEEECC RIAIQSGGDKERFWEIFHERMKTVKDALLFRLNRVRQARPENAPILYKYGAFGKRLQDGE EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHCCCCC NVDQLFNKERSTISIGYIGLYEAATVFYGGEWEGDKEAKNFTLDILKELKGYADNWKDEY CHHHHHCCCCCEEEEEEEEHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC GYWFSVYSTPSESLTDRFNRLDKEKYGVIKDITDKDYYQNSFHYDVRKKITPFEKIDFEK CEEEEEECCCCHHHHHHHHHHCHHHCCCHHCCCCCHHHCCCCCCHHHHHCCCHHHCCCCC DYPEFCSGGFIHYCEYPKMVHNTKALEAVWDYSYDRVAYLGTNTPIDKCYECNFEGEFVP CCHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHEECCCCCCCCC TEEGFKCPSCGNTDPEKADVVKRTCGYLGNPMKRPMVHGRHVEISNRVKHMENLGE CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHCCCCCCCEEEHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]