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The map label for this gene is ygjR [C]

Identifier: 226222913

GI number: 226222913

Start: 307453

End: 308424

Strand: Direct

Name: ygjR [C]

Synonym: Lm4b_00305

Alternate gene names: 226222913

Gene position: 307453-308424 (Clockwise)

Preceding gene: 226222909

Following gene: 226222915

Centisome position: 10.56

GC content: 38.68

Gene sequence:

>972_bases
ATGGGAAATTTAAACTGGGCAATTCTTGGACCAGGTTCAATTGCACACGAATTTGCAGAAGGTATGCGAGGAATGAACCG
TGAAATTTATGCGGTAGGAGCACGGAGTATAGAGAAGGGGCAAGCATTCGCAAGTCAATACGGAATAGAAAAGGTATACG
ATGACTTTGACAAAATGCTTGCTGATCCGGCGATAGATGTAGTTTATATCGCTACACCACACTCCAACCACTATGAATTT
ATCATGAAAAGTTTACATAATGGCAAACACGTTTTAGCTGAAAAAGCGATAACTGTAAGTAGCGAAGAACTTAATGAAAT
CAATGTGCTAGCCAAAGAGAAAGGCTTAATCGTTAAAGAAGCAATGACCATATTCCATATGCCGCTTTATAAAAAGTTAC
GAGAAATTGTGGAATCTGGAGCAATTGGTAAATTGAAAATTATTCAAGTTGCTTTTGGAAGTGCCAAAGAAAAAGATCCG
AAAAACCGTTTTTATAATATGGATTTGGCGGGTGGAGCATTACTTGATATTGGTACGTATGCCCTTAGTTTTGCTCGGTA
TTTTTTAAGTGAAACGCCAGATGAAGTATTAACGACGATGAAGAAATTCGAAACAGGTGTGGACGAACAGTCCGGAATTT
TACTGAAAAATAAAGAAGAGGAACTAGCGGTTGTATCGCTATCTTTCCGTGCTAAAATGCCAAAACGAGGTGTCATTGCT
TGTGAAGAAGGATTTATCACTGTAGATGAATACCCGCGTGCCAGCCGAGCAACTGTTACACACACGGCAACTGGAAAAGT
GGAAGAAATTGAGGTTGGTGAAACAAGTAAAGCTTTAGAATATGAAATTATAGCTATGGAAGAGAGCATCGCGACAGGAG
AAAACACGACTTATCAGTTAACAAATGATGTTATCACGATTATGAGCGATGTTAGAACGCAGTGGGGAATTAAATTTCCT
TTTGAAAAATAA

Upstream 100 bases:

>100_bases
TTAGTTAATAACTTAAGTATACCATGTGCGAATCGGAATAGTTATTATGATACAATAGTTTTTATCGAGTTCTAAAATAA
TTTTTTGGAGGAGTTCCATG

Downstream 100 bases:

>100_bases
GAAAACCCGCCGAGCTTGGCGGGTTTTTCTACGAATATTAATCAGTTAAGTTATCTTCTGTTTCTGGGTCGAAGAAGTGA
GATTTAGACATTTCGAATGC

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MGNLNWAILGPGSIAHEFAEGMRGMNREIYAVGARSIEKGQAFASQYGIEKVYDDFDKMLADPAIDVVYIATPHSNHYEF
IMKSLHNGKHVLAEKAITVSSEELNEINVLAKEKGLIVKEAMTIFHMPLYKKLREIVESGAIGKLKIIQVAFGSAKEKDP
KNRFYNMDLAGGALLDIGTYALSFARYFLSETPDEVLTTMKKFETGVDEQSGILLKNKEEELAVVSLSFRAKMPKRGVIA
CEEGFITVDEYPRASRATVTHTATGKVEEIEVGETSKALEYEIIAMEESIATGENTTYQLTNDVITIMSDVRTQWGIKFP
FEK

Sequences:

>Translated_323_residues
MGNLNWAILGPGSIAHEFAEGMRGMNREIYAVGARSIEKGQAFASQYGIEKVYDDFDKMLADPAIDVVYIATPHSNHYEF
IMKSLHNGKHVLAEKAITVSSEELNEINVLAKEKGLIVKEAMTIFHMPLYKKLREIVESGAIGKLKIIQVAFGSAKEKDP
KNRFYNMDLAGGALLDIGTYALSFARYFLSETPDEVLTTMKKFETGVDEQSGILLKNKEEELAVVSLSFRAKMPKRGVIA
CEEGFITVDEYPRASRATVTHTATGKVEEIEVGETSKALEYEIIAMEESIATGENTTYQLTNDVITIMSDVRTQWGIKFP
FEK
>Mature_322_residues
GNLNWAILGPGSIAHEFAEGMRGMNREIYAVGARSIEKGQAFASQYGIEKVYDDFDKMLADPAIDVVYIATPHSNHYEFI
MKSLHNGKHVLAEKAITVSSEELNEINVLAKEKGLIVKEAMTIFHMPLYKKLREIVESGAIGKLKIIQVAFGSAKEKDPK
NRFYNMDLAGGALLDIGTYALSFARYFLSETPDEVLTTMKKFETGVDEQSGILLKNKEEELAVVSLSFRAKMPKRGVIAC
EEGFITVDEYPRASRATVTHTATGKVEEIEVGETSKALEYEIIAMEESIATGENTTYQLTNDVITIMSDVRTQWGIKFPF
EK

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=336, Percent_Identity=26.1904761904762, Blast_Score=127, Evalue=2e-29,
Organism=Escherichia coli, GI145693182, Length=221, Percent_Identity=26.6968325791855, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787574, Length=193, Percent_Identity=30.5699481865285, Blast_Score=75, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24581117, Length=326, Percent_Identity=25.7668711656442, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24581115, Length=254, Percent_Identity=27.9527559055118, Blast_Score=107, Evalue=9e-24,
Organism=Drosophila melanogaster, GI24584727, Length=256, Percent_Identity=25.390625, Blast_Score=96, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 35956; Mature: 35824

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNLNWAILGPGSIAHEFAEGMRGMNREIYAVGARSIEKGQAFASQYGIEKVYDDFDKML
CCCCCEEEECCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHH
ADPAIDVVYIATPHSNHYEFIMKSLHNGKHVLAEKAITVSSEELNEINVLAKEKGLIVKE
CCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHEEECHHHHHHHHEEHHCCCCHHHH
AMTIFHMPLYKKLREIVESGAIGKLKIIQVAFGSAKEKDPKNRFYNMDLAGGALLDIGTY
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHEEEEECCCCHHHHHHHH
ALSFARYFLSETPDEVLTTMKKFETGVDEQSGILLKNKEEELAVVSLSFRAKMPKRGVIA
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEHHCCCCCCCEEE
CEEGFITVDEYPRASRATVTHTATGKVEEIEVGETSKALEYEIIAMEESIATGENTTYQL
ECCCEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEEEEEEHHHCCCCCCEEEE
TNDVITIMSDVRTQWGIKFPFEK
HHHHHHHHHHHHHHCCEECCCCC
>Mature Secondary Structure 
GNLNWAILGPGSIAHEFAEGMRGMNREIYAVGARSIEKGQAFASQYGIEKVYDDFDKML
CCCCEEEECCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCHHHHHHHHHHHH
ADPAIDVVYIATPHSNHYEFIMKSLHNGKHVLAEKAITVSSEELNEINVLAKEKGLIVKE
CCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHEEECHHHHHHHHEEHHCCCCHHHH
AMTIFHMPLYKKLREIVESGAIGKLKIIQVAFGSAKEKDPKNRFYNMDLAGGALLDIGTY
HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHEEEEECCCCHHHHHHHH
ALSFARYFLSETPDEVLTTMKKFETGVDEQSGILLKNKEEELAVVSLSFRAKMPKRGVIA
HHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEEEEHHCCCCCCCEEE
CEEGFITVDEYPRASRATVTHTATGKVEEIEVGETSKALEYEIIAMEESIATGENTTYQL
ECCCEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCEEEEEEEEEHHHCCCCCCEEEE
TNDVITIMSDVRTQWGIKFPFEK
HHHHHHHHHHHHHHCCEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7845353 [H]