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The map label for this gene is uup [C]

Identifier: 226222895

GI number: 226222895

Start: 284843

End: 286504

Strand: Direct

Name: uup [C]

Synonym: Lm4b_00287

Alternate gene names: 226222895

Gene position: 284843-286504 (Clockwise)

Preceding gene: 226222894

Following gene: 226222896

Centisome position: 9.78

GC content: 27.62

Gene sequence:

>1662_bases
GTGAATATAACTAAAAACGGATTATATATAATTATTGGGGCAAATGGAGTAGGGAAAACAACATTAGCTAAGAAAATACT
TCAAGCTAACAGAAGTATTAGTTGCATGATGAAGCAAGATGATAATCAAATATTGGAGTATGAGACGGTTTTAACCAATA
TTAGTATGAACGAAATCGCAGAAAAAACGGTTATTAATTTTCTGGAAGAACATCAATTAGACTATTTAATAACTAAAAAA
AGTAAATTTCTTAGTGGGGGAGAAAAAAGATTAGTTAACCTTCTAAGAGCTATTTTGTCAAATCAAGAAGTATTGATATT
AGATGAGCCATCAAATGACTTAGATATTGATGTATTTGAGAAGGCAAAACAAATTATTTATCAAGCGGCAAAATCTAAAA
TAATACTATTAATTACGCATGATGATCGTTTTACCGAATATGATAAAAAAATAGAAATAATGAAGAATCAAAGTTACGAA
GCAGATAGTTTCAGCTTTAATAAAGAAAGTTCGAAAGCGCGCATTATCAAAATTAAACCTAGAAGGACCTATTTCTTATA
TATCTTCTATTTAATTTGTATGATGATTTTCGCTATTTTTTTAGTGATTTTACTGAAAACAAATGCTGAAGAAACAAGTC
CTTCTAACGAAAAAGGTACATATCAACTTGCTACAATATACAGCACTAATGCTTCTTCTTATGACAATAATGAAGCAATT
AATACGATGCTTATACAATCAGCAACTAAATTTAATAAAGCTAAGTTCTTCACAGAAGAAACACGCATTAATGAAGACGA
GTATTATGAAGAAGCGATTAATTTGAAAAAAGATACTTATCAAGAGTTAATATATTTAGAATTATATGATCCAAAAACAG
AAGAATTTATCAATATTAAAGCTGTAATGATGGAAGCTTTACGTGGAGATTTAAAGTTGAACGCAGAGACAGAATTCATT
AGTAATGACGAAAATTACTATAAAAATAGTGATAGTCCATCTTTCCACGTGCCTAAAAGTTTAACTTTAACAGAAATTAA
AAAAGCTAAAATTAAGCAGCTAGGATTTGAACTTCATTATAGTAATACTTTGCAATCAAATCAGGTAGAAATAGAATTTA
ATCCTAGCGTGTATGCGCAAATTTTGAAAAAAGTAAATCAACAAGATGTTTTAATTACAGAAGCATACGTGCAATTAAAA
GCTCAAGAATCATTTTATGATTTCTTAGCAGAAAATAAACTATATGCTAAAAAAATATTTATTAAAGGATATGAACCAGA
GTTATTAAATGCTGAGGTTAATCAATACAGTAATGCAGTTATGCTGATAAAAAAAGTAGCACTTCTTATATGCTTACTAC
TCTTAGTATTATTAATTTTACTAATTATGTATGAGGTTAGTTATAAAAATAGTTATAGTACATTGACTTATTATGGCTAT
AATGAAAAAGAGCTACTTCAATTCAGAAAAAAAACGTATCTTATTACAAACTTTAAAATCTTTTCGGTTATTAGTACTGT
TATTTTTCTTTTAATTATGTGGAGTATTGTTCATTCGGTACTTATTACCGCCATAATAGGTGTAGTAATGATATTTTTCT
TTTTTGCCTACATCGTCATACCATTAATAATTAAAAACAACATTAGAAAGGCGATTATATGA

Upstream 100 bases:

>100_bases
TAATAAAAATGTAAAATCACAACTTATTGTAGATTTATTCGTAATTTAACAATAACAACAAGGCTCTTCATTCATCTAGA
AAATAAAAGGATATATCAAT

Downstream 100 bases:

>100_bases
ATAAAATAAATAAATTTAGCATTTTTTCTATCACTAAACCAGGTATTTACACAATTACAGGTAGTAACGGAAGCGGAAAA
ACAACCTTTATTGAAAATGA

Product: ABC transporter (ATP-binding protein)

Products: NA

Alternate protein names: ABC Transporter Related Protein

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MNITKNGLYIIIGANGVGKTTLAKKILQANRSISCMMKQDDNQILEYETVLTNISMNEIAEKTVINFLEEHQLDYLITKK
SKFLSGGEKRLVNLLRAILSNQEVLILDEPSNDLDIDVFEKAKQIIYQAAKSKIILLITHDDRFTEYDKKIEIMKNQSYE
ADSFSFNKESSKARIIKIKPRRTYFLYIFYLICMMIFAIFLVILLKTNAEETSPSNEKGTYQLATIYSTNASSYDNNEAI
NTMLIQSATKFNKAKFFTEETRINEDEYYEEAINLKKDTYQELIYLELYDPKTEEFINIKAVMMEALRGDLKLNAETEFI
SNDENYYKNSDSPSFHVPKSLTLTEIKKAKIKQLGFELHYSNTLQSNQVEIEFNPSVYAQILKKVNQQDVLITEAYVQLK
AQESFYDFLAENKLYAKKIFIKGYEPELLNAEVNQYSNAVMLIKKVALLICLLLLVLLILLIMYEVSYKNSYSTLTYYGY
NEKELLQFRKKTYLITNFKIFSVISTVIFLLIMWSIVHSVLITAIIGVVMIFFFFAYIVIPLIIKNNIRKAII

Sequences:

>Translated_553_residues
MNITKNGLYIIIGANGVGKTTLAKKILQANRSISCMMKQDDNQILEYETVLTNISMNEIAEKTVINFLEEHQLDYLITKK
SKFLSGGEKRLVNLLRAILSNQEVLILDEPSNDLDIDVFEKAKQIIYQAAKSKIILLITHDDRFTEYDKKIEIMKNQSYE
ADSFSFNKESSKARIIKIKPRRTYFLYIFYLICMMIFAIFLVILLKTNAEETSPSNEKGTYQLATIYSTNASSYDNNEAI
NTMLIQSATKFNKAKFFTEETRINEDEYYEEAINLKKDTYQELIYLELYDPKTEEFINIKAVMMEALRGDLKLNAETEFI
SNDENYYKNSDSPSFHVPKSLTLTEIKKAKIKQLGFELHYSNTLQSNQVEIEFNPSVYAQILKKVNQQDVLITEAYVQLK
AQESFYDFLAENKLYAKKIFIKGYEPELLNAEVNQYSNAVMLIKKVALLICLLLLVLLILLIMYEVSYKNSYSTLTYYGY
NEKELLQFRKKTYLITNFKIFSVISTVIFLLIMWSIVHSVLITAIIGVVMIFFFFAYIVIPLIIKNNIRKAII
>Mature_553_residues
MNITKNGLYIIIGANGVGKTTLAKKILQANRSISCMMKQDDNQILEYETVLTNISMNEIAEKTVINFLEEHQLDYLITKK
SKFLSGGEKRLVNLLRAILSNQEVLILDEPSNDLDIDVFEKAKQIIYQAAKSKIILLITHDDRFTEYDKKIEIMKNQSYE
ADSFSFNKESSKARIIKIKPRRTYFLYIFYLICMMIFAIFLVILLKTNAEETSPSNEKGTYQLATIYSTNASSYDNNEAI
NTMLIQSATKFNKAKFFTEETRINEDEYYEEAINLKKDTYQELIYLELYDPKTEEFINIKAVMMEALRGDLKLNAETEFI
SNDENYYKNSDSPSFHVPKSLTLTEIKKAKIKQLGFELHYSNTLQSNQVEIEFNPSVYAQILKKVNQQDVLITEAYVQLK
AQESFYDFLAENKLYAKKIFIKGYEPELLNAEVNQYSNAVMLIKKVALLICLLLLVLLILLIMYEVSYKNSYSTLTYYGY
NEKELLQFRKKTYLITNFKIFSVISTVIFLLIMWSIVHSVLITAIIGVVMIFFFFAYIVIPLIIKNNIRKAII

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 64181; Mature: 64181

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNITKNGLYIIIGANGVGKTTLAKKILQANRSISCMMKQDDNQILEYETVLTNISMNEIA
CCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHH
EKTVINFLEEHQLDYLITKKSKFLSGGEKRLVNLLRAILSNQEVLILDEPSNDLDIDVFE
HHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
KAKQIIYQAAKSKIILLITHDDRFTEYDKKIEIMKNQSYEADSFSFNKESSKARIIKIKP
HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
RRTYFLYIFYLICMMIFAIFLVILLKTNAEETSPSNEKGTYQLATIYSTNASSYDNNEAI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHH
NTMLIQSATKFNKAKFFTEETRINEDEYYEEAINLKKDTYQELIYLELYDPKTEEFINIK
HHHHHHHHHHHHHHHEEEHHHCCCHHHHHHHHHCCCHHHHHCEEEEEEECCCCHHHHHHH
AVMMEALRGDLKLNAETEFISNDENYYKNSDSPSFHVPKSLTLTEIKKAKIKQLGFELHY
HHHHHHHCCCEEECCCCCEECCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCEEEEE
SNTLQSNQVEIEFNPSVYAQILKKVNQQDVLITEAYVQLKAQESFYDFLAENKLYAKKIF
CCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEE
IKGYEPELLNAEVNQYSNAVMLIKKVALLICLLLLVLLILLIMYEVSYKNSYSTLTYYGY
EECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
NEKELLQFRKKTYLITNFKIFSVISTVIFLLIMWSIVHSVLITAIIGVVMIFFFFAYIVI
CHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLIIKNNIRKAII
HHHHHCCHHHHCC
>Mature Secondary Structure
MNITKNGLYIIIGANGVGKTTLAKKILQANRSISCMMKQDDNQILEYETVLTNISMNEIA
CCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHH
EKTVINFLEEHQLDYLITKKSKFLSGGEKRLVNLLRAILSNQEVLILDEPSNDLDIDVFE
HHHHHHHHHHCCCCEEEECCHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
KAKQIIYQAAKSKIILLITHDDRFTEYDKKIEIMKNQSYEADSFSFNKESSKARIIKIKP
HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECC
RRTYFLYIFYLICMMIFAIFLVILLKTNAEETSPSNEKGTYQLATIYSTNASSYDNNEAI
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHH
NTMLIQSATKFNKAKFFTEETRINEDEYYEEAINLKKDTYQELIYLELYDPKTEEFINIK
HHHHHHHHHHHHHHHEEEHHHCCCHHHHHHHHHCCCHHHHHCEEEEEEECCCCHHHHHHH
AVMMEALRGDLKLNAETEFISNDENYYKNSDSPSFHVPKSLTLTEIKKAKIKQLGFELHY
HHHHHHHCCCEEECCCCCEECCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHCEEEEE
SNTLQSNQVEIEFNPSVYAQILKKVNQQDVLITEAYVQLKAQESFYDFLAENKLYAKKIF
CCCCCCCEEEEEECHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCEEEEEE
IKGYEPELLNAEVNQYSNAVMLIKKVALLICLLLLVLLILLIMYEVSYKNSYSTLTYYGY
EECCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
NEKELLQFRKKTYLITNFKIFSVISTVIFLLIMWSIVHSVLITAIIGVVMIFFFFAYIVI
CHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLIIKNNIRKAII
HHHHHCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA