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The map label for this gene is cydC [C]

Identifier: 226222896

GI number: 226222896

Start: 286501

End: 288276

Strand: Direct

Name: cydC [C]

Synonym: Lm4b_00288

Alternate gene names: 226222896

Gene position: 286501-288276 (Clockwise)

Preceding gene: 226222895

Following gene: 226222897

Centisome position: 9.84

GC content: 28.94

Gene sequence:

>1776_bases
ATGAATAAAATAAATAAATTTAGCATTTTTTCTATCACTAAACCAGGTATTTACACAATTACAGGTAGTAACGGAAGCGG
AAAAACAACCTTTATTGAAAATGAATTAAAAAATAACACAAATAAAGTAAAAGATGTAGCTTACTTTGCGCAAAAAAATT
GGAAATATAAAACTAATGTAGAGAAATATTTACACTTCCCAAAAACTAATCCGAGCTTAGTTCAAAAGTATTGCGAGTTG
TTTTCTGTAGATAACTACTACTTAGAAAAAGATATCCAATTATTAAGCGGCGGAGAATTTGTCAAAGTAGAATTAGTGAG
AACATTAGCTTTGGACTCTTCTATAATTATTCTAGATGAACCTACAAATAATCTAGATAACAAGTCCTCGGAGATACTTG
CTAATATTTTAAGTGAATTAGCAAAAACGAAAATTATTTACTTAGTTAGTCATGATACTCGATTGGAGCATTTTTTTGAT
AAAACTATTTTTGTAGATAAAGATAGGATAGAAGTATCGTCTAATGTTGAAATAGAGCAGAACGAGATTCAAGTTAATAG
TAAAAGAGTTGTTTCAAATGGAAGAATTTTAAAATATTTACTTAGTTCAAAATTTAACTTCTTGATGTTTGCGTTTATTA
TAGTACTAACGATCTTATTAACCAATATTACCTCCACTATTATTTTACGCTCAGTTCCAATAGAAGAGAATTTAACTAGT
GATTATAACTTTGAGTTGATGGATATTGCGGAGAATTATTCTAGATATTTTAATATTGAAATGACGGAAAGTGAAATTGA
AGCTGAATTTCAGGAACCTAATCATCTCACTACAAATGAGTTGATTGAATTACAAGACAAAGACTATATCAAACAAATTT
ATGTTGTAGATGAAAGCTATATAAATGAATTTGTTTTGGATAATTCCAAGTTTGAAGTTTTGGCTCTTCCGGAAATAATT
ACAGACTCGCCTAACTATGTAAATGCTTTTCCTGTTACTAAAATGCACTTAACCAAAGGACGTTTTCCAAAAGACGATGC
TAAAGAAATCGCGTTATCTTTTGCTCAACTGAAAAAATTTTTCCATGATGATATTAGTGAAGAATCAGCTATAGGTAATA
AATTAGAATTTGAAGATGAGTTGTATGAAATAGTCGGTATCGTTAACTCTCCAGTAGCAGCGATCTCTTATTCGAAACAA
GTGAGTAAAGGAACTGTTGAGGTTGAGGATAAGACTTCTGAGAAATTAAATAATATATTGTTAAAGCTTGAGAAAGAAAA
TTATGATAACCCTAATTTTTCTATTATTTCCATTAAACTAGCTAGTAAAAACCAACATGAACTCTTAAACTATTTAAAAG
TTCATGGACCAAGCTACCAATATGCCTCAAATTATGTGGATAGTATTTCGCAAGTAGCTTTTTATAAACAAAATTTAGCA
AAAATACTTCTTATATCAGTAATTTTTTCTCTTATAGTATCTGTGTTGATTTTTATTTTTGGAAGAAAATCATTTAGTTT
AATTAATGGCTTTTTAAACGATATGTCTAATTTGAATTTTACACCGAGAAAGAATAAACGGTTTATTTATGTAATAATGA
TATTAGATTTTTTGTTGAGTATGCCTGCGTGCTTGTTAGTAAGTCGAGTTATTATTGGGGATAATATAGGTATGCTAATG
ATTCTTCCGACACTGGGGGGTTCAGCTATCATATTTATGCTCACATTACTATTAATGAGTTACCGGGATAAGAAGAATGA
TTTTAGAAATTTATAA

Upstream 100 bases:

>100_bases
TACTTATTACCGCCATAATAGGTGTAGTAATGATATTTTTCTTTTTTGCCTACATCGTCATACCATTAATAATTAAAAAC
AACATTAGAAAGGCGATTAT

Downstream 100 bases:

>100_bases
AAGTTGGGTTATAGTCTTAGTTTTGCATGAATTAGCCCACATTTTCTTTGTCCTACTTTTTAAGGGAAAGATAGGTAAGG
TAGTAATAGGTAACTTTTTC

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 591

Protein sequence:

>591_residues
MNKINKFSIFSITKPGIYTITGSNGSGKTTFIENELKNNTNKVKDVAYFAQKNWKYKTNVEKYLHFPKTNPSLVQKYCEL
FSVDNYYLEKDIQLLSGGEFVKVELVRTLALDSSIIILDEPTNNLDNKSSEILANILSELAKTKIIYLVSHDTRLEHFFD
KTIFVDKDRIEVSSNVEIEQNEIQVNSKRVVSNGRILKYLLSSKFNFLMFAFIIVLTILLTNITSTIILRSVPIEENLTS
DYNFELMDIAENYSRYFNIEMTESEIEAEFQEPNHLTTNELIELQDKDYIKQIYVVDESYINEFVLDNSKFEVLALPEII
TDSPNYVNAFPVTKMHLTKGRFPKDDAKEIALSFAQLKKFFHDDISEESAIGNKLEFEDELYEIVGIVNSPVAAISYSKQ
VSKGTVEVEDKTSEKLNNILLKLEKENYDNPNFSIISIKLASKNQHELLNYLKVHGPSYQYASNYVDSISQVAFYKQNLA
KILLISVIFSLIVSVLIFIFGRKSFSLINGFLNDMSNLNFTPRKNKRFIYVIMILDFLLSMPACLLVSRVIIGDNIGMLM
ILPTLGGSAIIFMLTLLLMSYRDKKNDFRNL

Sequences:

>Translated_591_residues
MNKINKFSIFSITKPGIYTITGSNGSGKTTFIENELKNNTNKVKDVAYFAQKNWKYKTNVEKYLHFPKTNPSLVQKYCEL
FSVDNYYLEKDIQLLSGGEFVKVELVRTLALDSSIIILDEPTNNLDNKSSEILANILSELAKTKIIYLVSHDTRLEHFFD
KTIFVDKDRIEVSSNVEIEQNEIQVNSKRVVSNGRILKYLLSSKFNFLMFAFIIVLTILLTNITSTIILRSVPIEENLTS
DYNFELMDIAENYSRYFNIEMTESEIEAEFQEPNHLTTNELIELQDKDYIKQIYVVDESYINEFVLDNSKFEVLALPEII
TDSPNYVNAFPVTKMHLTKGRFPKDDAKEIALSFAQLKKFFHDDISEESAIGNKLEFEDELYEIVGIVNSPVAAISYSKQ
VSKGTVEVEDKTSEKLNNILLKLEKENYDNPNFSIISIKLASKNQHELLNYLKVHGPSYQYASNYVDSISQVAFYKQNLA
KILLISVIFSLIVSVLIFIFGRKSFSLINGFLNDMSNLNFTPRKNKRFIYVIMILDFLLSMPACLLVSRVIIGDNIGMLM
ILPTLGGSAIIFMLTLLLMSYRDKKNDFRNL
>Mature_591_residues
MNKINKFSIFSITKPGIYTITGSNGSGKTTFIENELKNNTNKVKDVAYFAQKNWKYKTNVEKYLHFPKTNPSLVQKYCEL
FSVDNYYLEKDIQLLSGGEFVKVELVRTLALDSSIIILDEPTNNLDNKSSEILANILSELAKTKIIYLVSHDTRLEHFFD
KTIFVDKDRIEVSSNVEIEQNEIQVNSKRVVSNGRILKYLLSSKFNFLMFAFIIVLTILLTNITSTIILRSVPIEENLTS
DYNFELMDIAENYSRYFNIEMTESEIEAEFQEPNHLTTNELIELQDKDYIKQIYVVDESYINEFVLDNSKFEVLALPEII
TDSPNYVNAFPVTKMHLTKGRFPKDDAKEIALSFAQLKKFFHDDISEESAIGNKLEFEDELYEIVGIVNSPVAAISYSKQ
VSKGTVEVEDKTSEKLNNILLKLEKENYDNPNFSIISIKLASKNQHELLNYLKVHGPSYQYASNYVDSISQVAFYKQNLA
KILLISVIFSLIVSVLIFIFGRKSFSLINGFLNDMSNLNFTPRKNKRFIYVIMILDFLLSMPACLLVSRVIIGDNIGMLM
ILPTLGGSAIIFMLTLLLMSYRDKKNDFRNL

Specific function: Somehow Involved In The Cytochrome D Branch Of Aerobic Respiration. Seems To Be A Component Of A Transport System. [C]

COG id: COG1121

COG function: function code P; ABC-type Mn/Zn transport systems, ATPase component

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 67840; Mature: 67840

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKINKFSIFSITKPGIYTITGSNGSGKTTFIENELKNNTNKVKDVAYFAQKNWKYKTNV
CCCCCCEEEEEECCCCEEEEECCCCCCCEEEEHHHHHCCCHHHHHHHHHHHCCCCEECCH
EKYLHFPKTNPSLVQKYCELFSVDNYYLEKDIQLLSGGEFVKVELVRTLALDSSIIILDE
HHHHCCCCCCHHHHHHHHHHHCCCCHHHHCCHHEECCCCEEEEHHHHHHHCCCEEEEEEC
PTNNLDNKSSEILANILSELAKTKIIYLVSHDTRLEHFFDKTIFVDKDRIEVSSNVEIEQ
CCCCCCCHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHCCEEEEECCCEEECCCCEEEC
NEIQVNSKRVVSNGRILKYLLSSKFNFLMFAFIIVLTILLTNITSTIILRSVPIEENLTS
CEEEECCHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC
DYNFELMDIAENYSRYFNIEMTESEIEAEFQEPNHLTTNELIELQDKDYIKQIYVVDESY
CCCEEEHHHHHHHHHEEEEEEEHHHHHHHHCCCCCCCHHHHHCCCCHHHHHEEEEECHHH
INEFVLDNSKFEVLALPEIITDSPNYVNAFPVTKMHLTKGRFPKDDAKEIALSFAQLKKF
HHHHHCCCCCEEEEECCHHHCCCCCCEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
FHDDISEESAIGNKLEFEDELYEIVGIVNSPVAAISYSKQVSKGTVEVEDKTSEKLNNIL
HHHCCCCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHH
LKLEKENYDNPNFSIISIKLASKNQHELLNYLKVHGPSYQYASNYVDSISQVAFYKQNLA
EEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KILLISVIFSLIVSVLIFIFGRKSFSLINGFLNDMSNLNFTPRKNKRFIYVIMILDFLLS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHH
MPACLLVSRVIIGDNIGMLMILPTLGGSAIIFMLTLLLMSYRDKKNDFRNL
CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MNKINKFSIFSITKPGIYTITGSNGSGKTTFIENELKNNTNKVKDVAYFAQKNWKYKTNV
CCCCCCEEEEEECCCCEEEEECCCCCCCEEEEHHHHHCCCHHHHHHHHHHHCCCCEECCH
EKYLHFPKTNPSLVQKYCELFSVDNYYLEKDIQLLSGGEFVKVELVRTLALDSSIIILDE
HHHHCCCCCCHHHHHHHHHHHCCCCHHHHCCHHEECCCCEEEEHHHHHHHCCCEEEEEEC
PTNNLDNKSSEILANILSELAKTKIIYLVSHDTRLEHFFDKTIFVDKDRIEVSSNVEIEQ
CCCCCCCHHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHCCEEEEECCCEEECCCCEEEC
NEIQVNSKRVVSNGRILKYLLSSKFNFLMFAFIIVLTILLTNITSTIILRSVPIEENLTS
CEEEECCHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCC
DYNFELMDIAENYSRYFNIEMTESEIEAEFQEPNHLTTNELIELQDKDYIKQIYVVDESY
CCCEEEHHHHHHHHHEEEEEEEHHHHHHHHCCCCCCCHHHHHCCCCHHHHHEEEEECHHH
INEFVLDNSKFEVLALPEIITDSPNYVNAFPVTKMHLTKGRFPKDDAKEIALSFAQLKKF
HHHHHCCCCCEEEEECCHHHCCCCCCEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHH
FHDDISEESAIGNKLEFEDELYEIVGIVNSPVAAISYSKQVSKGTVEVEDKTSEKLNNIL
HHHCCCCHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEECCCHHHHHHHHH
LKLEKENYDNPNFSIISIKLASKNQHELLNYLKVHGPSYQYASNYVDSISQVAFYKQNLA
EEEECCCCCCCCEEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
KILLISVIFSLIVSVLIFIFGRKSFSLINGFLNDMSNLNFTPRKNKRFIYVIMILDFLLS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHH
MPACLLVSRVIIGDNIGMLMILPTLGGSAIIFMLTLLLMSYRDKKNDFRNL
CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA