Click here to switch to the map view.

The map label for this gene is rtcB [H]

Identifier: 226222881

GI number: 226222881

Start: 265073

End: 266251

Strand: Direct

Name: rtcB [H]

Synonym: Lm4b_00273

Alternate gene names: 226222881

Gene position: 265073-266251 (Clockwise)

Preceding gene: 226222880

Following gene: 226222882

Centisome position: 9.1

GC content: 39.95

Gene sequence:

>1179_bases
ATGCTAACATTAAAAGGAAAATATAACGAAGCGAAAGTTTTTACAGATAATGTGGACGACAATACCATCGGGCAAATTAT
TACGCTGTGTAATCAACCGTTTGCGAAGGATAGTAAGATTCGGATCATGCCCGACACGCACGGTGGTAAAGGCTGTGTGA
TTGGAAAGACAATGACAATTCAAGATAAAATTGTACCGAATTTGGTTGGAGTAGACATCGGTTGCGGACTGTATGTAGTG
AAACTAAAACCTGGCAAGTTAAAAATGGACTTTGATAAGCTAGATAAAGTTATTCGCGAACGAGTGCCATCCGGAAGCAA
AACGCACGATAAGCCTGTAGATGAATTTGATTTGGAAGGTATAGTTGCGCCAATTCATCACGGCTGGGCAGCTAGAAGTA
TAGGGACGCTTGGTGGCGGGAACCATTTTATTGAAGTGAATCAAGGTTCTGATGGTATTTACCTTGTAATCCATAGTGGA
AGTCGGGTGCTTGGTAAAGAAATCGCAGAATACCACCAAGAAGTAGCTTATAAAAGATTAGACATATTGCGTAAAGAATT
GAAATTAGACGCAACTGCTGCGAAAAAACGCGGAAATTTAGAAATGGCCAACAACTTGAACGGTGAGCGTGAGCAAGTGA
AATTGGATTATGACTTATCCTATGTGACGGGCTCTGATTTAAACAATTATTTAAATGACATGGAAATTGCACAAAAATTT
GCAGCGCGTAATCGTTACGTCATGGCAGAAACTATTTTAAAAGCGATGAAGTGGGATAAAGCAGTTGTTTCAGCGTTTGA
TTGTGTGCATAATTACATTGATATTGATAACCACATGCTTAGAAAAGGTGCGACATCTGCTCAGCTTGGAGAGCAGATTA
TCGTTCCGCTTAATATGCGCGATGGCAGCATTCTTGCAACGGGTAAAGGAAATGCAGATTGGAATTACTCGGCGCCGCAT
GGGGCGGGAAGGATGCTAAGTCGTTCTAAAGCAAAAGCGCAAATCAGTTTAGAAAGCTATCAGGCAGCAATGAAAGACGT
TTGGACTACTTCTGTTTCTAAAAAAACAATTGATGAAGCTCCAAAAGCCTATAAATCTGCTAAACAATTACTTGCTGATG
TAGAAGATACGATGGAGATTCAAGAAATAATTAAACCGTTATACAATTTCAAAGCATGA

Upstream 100 bases:

>100_bases
AGGTGAGTCGAATGACAATAGGAGAACTGGAGAATTTTAACAGCTAGGAAGAGAAGCGGAGACTTTCATTTCTCTATTAA
ACAGAAAATGAGGAATAGAA

Downstream 100 bases:

>100_bases
TGGAAAAGAAGCAGCATATATTACTACTTGCTGCTTCTTCTTTTTGTTGTTAGAGTAGTGTTATAAGGAAATAAGTTCTC
ACTTTTTCTGTAATCTGATA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKDSKIRIMPDTHGGKGCVIGKTMTIQDKIVPNLVGVDIGCGLYVV
KLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDEFDLEGIVAPIHHGWAARSIGTLGGGNHFIEVNQGSDGIYLVIHSG
SRVLGKEIAEYHQEVAYKRLDILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNNYLNDMEIAQKF
AARNRYVMAETILKAMKWDKAVVSAFDCVHNYIDIDNHMLRKGATSAQLGEQIIVPLNMRDGSILATGKGNADWNYSAPH
GAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEAPKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA

Sequences:

>Translated_392_residues
MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKDSKIRIMPDTHGGKGCVIGKTMTIQDKIVPNLVGVDIGCGLYVV
KLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDEFDLEGIVAPIHHGWAARSIGTLGGGNHFIEVNQGSDGIYLVIHSG
SRVLGKEIAEYHQEVAYKRLDILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNNYLNDMEIAQKF
AARNRYVMAETILKAMKWDKAVVSAFDCVHNYIDIDNHMLRKGATSAQLGEQIIVPLNMRDGSILATGKGNADWNYSAPH
GAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEAPKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA
>Mature_392_residues
MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKDSKIRIMPDTHGGKGCVIGKTMTIQDKIVPNLVGVDIGCGLYVV
KLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDEFDLEGIVAPIHHGWAARSIGTLGGGNHFIEVNQGSDGIYLVIHSG
SRVLGKEIAEYHQEVAYKRLDILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNNYLNDMEIAQKF
AARNRYVMAETILKAMKWDKAVVSAFDCVHNYIDIDNHMLRKGATSAQLGEQIIVPLNMRDGSILATGKGNADWNYSAPH
GAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEAPKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Escherichia coli, GI2367224, Length=397, Percent_Identity=30.4785894206549, Blast_Score=152, Evalue=5e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 43490; Mature: 43490

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKDSKIRIMPDTHGGKGCVIGKTMTI
CEEECCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECEEEE
QDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDEFDLEG
HHHHCCHHHCEEECCCEEEEEECCCCEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
IVAPIHHGWAARSIGTLGGGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKRL
EEHHHHCCHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
DILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNNYLNDMEIAQKF
HHHHHHHHCCHHHHHHCCCEEHHCCCCCCHHEEEEEEEEEEEECCHHHHHHHHHHHHHHH
AARNRYVMAETILKAMKWDKAVVSAFDCVHNYIDIDNHMLRKGATSAQLGEQIIVPLNMR
HHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHCCCEEEEEEECC
DGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEA
CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHH
PKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKDSKIRIMPDTHGGKGCVIGKTMTI
CEEECCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCEEEEECEEEE
QDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERVPSGSKTHDKPVDEFDLEG
HHHHCCHHHCEEECCCEEEEEECCCCEEECHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
IVAPIHHGWAARSIGTLGGGNHFIEVNQGSDGIYLVIHSGSRVLGKEIAEYHQEVAYKRL
EEHHHHCCHHHHHCCCCCCCCEEEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
DILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYDLSYVTGSDLNNYLNDMEIAQKF
HHHHHHHHCCHHHHHHCCCEEHHCCCCCCHHEEEEEEEEEEEECCHHHHHHHHHHHHHHH
AARNRYVMAETILKAMKWDKAVVSAFDCVHNYIDIDNHMLRKGATSAQLGEQIIVPLNMR
HHCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCHHHCCCEEEEEEECC
DGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQISLESYQAAMKDVWTTSVSKKTIDEA
CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHH
PKAYKSAKQLLADVEDTMEIQEIIKPLYNFKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]