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The map label for this gene is yfhH [C]

Identifier: 226222686

GI number: 226222686

Start: 52633

End: 53412

Strand: Direct

Name: yfhH [C]

Synonym: Lm4b_00050

Alternate gene names: 226222686

Gene position: 52633-53412 (Clockwise)

Preceding gene: 226222685

Following gene: 226222687

Centisome position: 1.81

GC content: 32.69

Gene sequence:

>780_bases
ATGGACTTTTTCGAAATTTCCAGTAAGACTGTAGCTTCCCTAACTCGGAATGAGCGGATTTTATTTGACTATGTCGTTAA
GAATATGAATTTAATTAAAAATCAAAGTATTCGAGAAGTTTCTGCAGAATGCTTTGTTTCAACAACAACTTTTTTGCGTT
TTGTAAGAAAGCTTGGATTTACTGGTTATAGCGAGTTTACAACAGTCTTAAAGTTCACTTTACTTGGGCATACAGAGCTA
AAACCGTCCCCATTTGTCGTAGAACAGTCGGATTATCGTGAAGAATATTTGAAAAACATTATTGAATCTGTCCGAGTTTT
AGAACCAAGTAAAATCAAGAAAATCACCAAAAAACTAGTAAGCAAACCGCGAATTTATTTTTTTGCTAAAGGGCTGAGTA
AACATGCTGCGAAATACATCAAATATCTCTATACAATGAGCGGATTTTTGGTAGAGTTTCCTGAAGATTATCAGTATCGC
CAAGCTGTATTGCCGCATATTGGTAAAGATGATTTAGTTTTTATCCTTACGTACGGTGGACATGACATTGAATTAATCCA
AACTGCCCAAAAACTAAAAAGCAGAAATGAAACGCCCATGTTGATTTCGATTACTGGGGCTGATAATAATATTATTCAAA
ATATGAGTGATATTAATTTATATATTTTTACAGATGAAATTGAAATGAATAATTTAGATATTACTTCTCGCATCTCTACA
ATTGCAATTATGGAGCTAATCTTATACCAGTTTATGGAAGATGAAACTAGTAGTTTTTAA

Upstream 100 bases:

>100_bases
AAAGCACGTGAGATTTTGCTAGGCGGCGGAAATATTCACTGTATCACGCAACATCTCCCTGATAAAAGTACGATACGTGA
ATAAAAAGGAGACTTGAAGT

Downstream 100 bases:

>100_bases
TTGTTAAGAATTGATAAATAAGTCACAAGTCTGATACAAGGAGACTTGACTTGTGGTAAAATGAACTTTGACTTTTAAAA
AAAGAAAAGGAAGTGAGTGC

Product: Conserved hypothetical protein, hypothetical regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 259

Protein sequence:

>259_residues
MDFFEISSKTVASLTRNERILFDYVVKNMNLIKNQSIREVSAECFVSTTTFLRFVRKLGFTGYSEFTTVLKFTLLGHTEL
KPSPFVVEQSDYREEYLKNIIESVRVLEPSKIKKITKKLVSKPRIYFFAKGLSKHAAKYIKYLYTMSGFLVEFPEDYQYR
QAVLPHIGKDDLVFILTYGGHDIELIQTAQKLKSRNETPMLISITGADNNIIQNMSDINLYIFTDEIEMNNLDITSRIST
IAIMELILYQFMEDETSSF

Sequences:

>Translated_259_residues
MDFFEISSKTVASLTRNERILFDYVVKNMNLIKNQSIREVSAECFVSTTTFLRFVRKLGFTGYSEFTTVLKFTLLGHTEL
KPSPFVVEQSDYREEYLKNIIESVRVLEPSKIKKITKKLVSKPRIYFFAKGLSKHAAKYIKYLYTMSGFLVEFPEDYQYR
QAVLPHIGKDDLVFILTYGGHDIELIQTAQKLKSRNETPMLISITGADNNIIQNMSDINLYIFTDEIEMNNLDITSRIST
IAIMELILYQFMEDETSSF
>Mature_259_residues
MDFFEISSKTVASLTRNERILFDYVVKNMNLIKNQSIREVSAECFVSTTTFLRFVRKLGFTGYSEFTTVLKFTLLGHTEL
KPSPFVVEQSDYREEYLKNIIESVRVLEPSKIKKITKKLVSKPRIYFFAKGLSKHAAKYIKYLYTMSGFLVEFPEDYQYR
QAVLPHIGKDDLVFILTYGGHDIELIQTAQKLKSRNETPMLISITGADNNIIQNMSDINLYIFTDEIEMNNLDITSRIST
IAIMELILYQFMEDETSSF

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 30071; Mature: 30071

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFFEISSKTVASLTRNERILFDYVVKNMNLIKNQSIREVSAECFVSTTTFLRFVRKLGF
CCCHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
TGYSEFTTVLKFTLLGHTELKPSPFVVEQSDYREEYLKNIIESVRVLEPSKIKKITKKLV
CCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SKPRIYFFAKGLSKHAAKYIKYLYTMSGFLVEFPEDYQYRQAVLPHIGKDDLVFILTYGG
CCCCEEEEECCHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHCCCCCCCCEEEEEEECC
HDIELIQTAQKLKSRNETPMLISITGADNNIIQNMSDINLYIFTDEIEMNNLDITSRIST
CCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCCCEEEEEECCEECCCCCHHHHHHH
IAIMELILYQFMEDETSSF
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDFFEISSKTVASLTRNERILFDYVVKNMNLIKNQSIREVSAECFVSTTTFLRFVRKLGF
CCCHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC
TGYSEFTTVLKFTLLGHTELKPSPFVVEQSDYREEYLKNIIESVRVLEPSKIKKITKKLV
CCHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
SKPRIYFFAKGLSKHAAKYIKYLYTMSGFLVEFPEDYQYRQAVLPHIGKDDLVFILTYGG
CCCCEEEEECCHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHCCCCCCCCEEEEEEECC
HDIELIQTAQKLKSRNETPMLISITGADNNIIQNMSDINLYIFTDEIEMNNLDITSRIST
CCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCCCEEEEEECCEECCCCCHHHHHHH
IAIMELILYQFMEDETSSF
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8177218; 11792842 [H]