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The map label for this gene is dedA [H]

Identifier: 226222687

GI number: 226222687

Start: 53516

End: 54175

Strand: Direct

Name: dedA [H]

Synonym: Lm4b_00051

Alternate gene names: 226222687

Gene position: 53516-54175 (Clockwise)

Preceding gene: 226222686

Following gene: 226222688

Centisome position: 1.84

GC content: 34.7

Gene sequence:

>660_bases
GTGGATTTTATTACCTATATCATTGATTTTATTTTGCACATTGACCAACATTTAGTGGAGATTATAAATAATTTTGGAAT
TTGGACTTACATTATTTTGTTCCTGATTGTTTTTATAGAGACTGGATTGGTAGTATTTCCATTTTTACCAGGAGATTCAT
TACTATTCGCAGCCGGTGCATTATCTGTATTAGATGGTTCGATTTTACATATTGTTCCGCTAATTATTACTTTATGGTTA
GCAGCAGTTCTAGGCGATACAGTGAACTATCATATCGGTAAAAAGATTGGAACATCCATACCAGAAGATAGCTGGTTTGG
GAAACTAATAAATAAAGAAAAAATGGAAAAAGCGGAGGCGTTCTTCAATAAACATGGTGGAAAAACAATTTTTATTGCTA
GGTTCATGCCTTTTATTCGCACGTTCGCGCCATTTGTAGCTGGAGCAAGCCGTATGAATTATCGTTATTTCTTAAATTAT
AATATTTTAGGGGCAACTGTTTGGGTATTACTTTGTACGCTCGCGGGTTACTTCTTCGGGAACTTCCCAATCGTTAAAGA
CAACTTCTCGTTAGTAGTAATCGGAATTATCGTAGTTTCCGTTATCCCAATGGTAGTTTCGTTCATTAAAAGTAAAATGG
ACAAAAAAAGCGCAGAATAA

Upstream 100 bases:

>100_bases
TTAAGAATTGATAAATAAGTCACAAGTCTGATACAAGGAGACTTGACTTGTGGTAAAATGAACTTTGACTTTTAAAAAAA
GAAAAGGAAGTGAGTGCCTG

Downstream 100 bases:

>100_bases
TCTCTGTGCTTTTTTTATTTCCCGGGAAATCTCTCGCATACATGACAAACTTTTGGGGTAATTAGTTAGGAAGAGGTGAT
GAAAATGGAACAAGCATTGA

Product: DedA protein

Products: NA

Alternate protein names: Protein DSG-1 [H]

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWL
AAVLGDTVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNY
NILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSAE

Sequences:

>Translated_219_residues
MDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWL
AAVLGDTVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNY
NILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSAE
>Mature_219_residues
MDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWL
AAVLGDTVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNY
NILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSAE

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=210, Percent_Identity=52.8571428571429, Blast_Score=234, Evalue=4e-63,
Organism=Escherichia coli, GI1789384, Length=193, Percent_Identity=32.1243523316062, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1789481, Length=155, Percent_Identity=36.7741935483871, Blast_Score=94, Evalue=8e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24641; Mature: 24641

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLVVFPFLPGDSLLFAAGA
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
LSVLDGSILHIVPLIITLWLAAVLGDTVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEA
HHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNYNILGATVWVLLCTLAGYFFG
HHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHC
NFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSAE
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLVVFPFLPGDSLLFAAGA
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHH
LSVLDGSILHIVPLIITLWLAAVLGDTVNYHIGKKIGTSIPEDSWFGKLINKEKMEKAEA
HHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
FFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNYNILGATVWVLLCTLAGYFFG
HHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHC
NFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSAE
CCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]