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The map label for this gene is agaC [H]

Identifier: 226222663

GI number: 226222663

Start: 27942

End: 28745

Strand: Direct

Name: agaC [H]

Synonym: Lm4b_00026

Alternate gene names: 226222663

Gene position: 27942-28745 (Clockwise)

Preceding gene: 226222662

Following gene: 226222664

Centisome position: 0.96

GC content: 43.03

Gene sequence:

>804_bases
ATGGATTTAGCAGTTTGGCAGATTATATTGTTAGTTATACTCGCAGCTTGTACCATTCTTGATGCTTTAACTTTAGTAAT
AGGACTTAATTTCCCTGTAATAACAGGAACGCTTGCTGGAATCATTATGGGTGACATGGTGCTCGGACTTGCGATTGGGG
CAACTTTACAGCTGATGGTTCTAGGTGTTGGTACATACGGCGGAGCATCGATTCCTGACTTTACAACGGGAGCAATCGTC
GGCACAGTATTTGCCGTTTTATCAGGTCAAGATGCGGAATTTGCGATTGGACTTGCAATTCCAGTGGGACTTTTAATGGT
TCAATTAGACATTTTAGCAAGATTTACGAATACATTTTTCTTGCACCGCATTGATTCTAATATTGCTTCGGGCAACATTT
CGGCGGTTAAAAGGAACATTTGGTATGGGGCGCTACCATGGGCTTTATCACGCGCGGTTCCCGTATTTATCATGTTGACT
TTCGGACAAAGCGTGGTTGATTTTATTCTAAATGAAATTCCAGAGTGGCTAATGGGCGGCCTTCGTGTAGCTGGTGGAAT
TCTTCCGGTAGTTGGTATTGCGATTCTCCTTCGTTACTTACCAACAAACAAATTCGTCGCTTATTTAATTATCGGATTTG
TAGCAGCAGCTTATCTAAAAGTACCGATGCTAGGCGTGGCACTAATTGGCGTGGCTTTGGCAATCATTTACTTTAAACAA
AATTTCAAAAATCCAGTGGCTGCCGGAGCAAATGGCGCAGCGCTAGTTGGGGAGGAGAATGAAGATGGCGAATACGAAGA
CTGA

Upstream 100 bases:

>100_bases
CAAAAAGGCATTAAAATCACTGCCCAAATGGTTCCGAGTGAAGATGCGGTTGAATTTGCAAGTTTATTAAAAAAATAAGT
GATAAGAAGGGAGAACTACA

Downstream 100 bases:

>100_bases
GCAGGATTTTGAAAAAGTACTCAAGAGACGCGATTTAATAGCAGCAAACTTTCGTTGGTTGTTTGCCAGCCAAATATGTT
GGAACTATGAGCGAATGATG

Product: PTS system, fructose-specific IIC component

Products: NA

Alternate protein names: EIIC-Aga; PTS system N-acetylgalactosamine-specific EIIC component 1 [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MDLAVWQIILLVILAACTILDALTLVIGLNFPVITGTLAGIIMGDMVLGLAIGATLQLMVLGVGTYGGASIPDFTTGAIV
GTVFAVLSGQDAEFAIGLAIPVGLLMVQLDILARFTNTFFLHRIDSNIASGNISAVKRNIWYGALPWALSRAVPVFIMLT
FGQSVVDFILNEIPEWLMGGLRVAGGILPVVGIAILLRYLPTNKFVAYLIIGFVAAAYLKVPMLGVALIGVALAIIYFKQ
NFKNPVAAGANGAALVGEENEDGEYED

Sequences:

>Translated_267_residues
MDLAVWQIILLVILAACTILDALTLVIGLNFPVITGTLAGIIMGDMVLGLAIGATLQLMVLGVGTYGGASIPDFTTGAIV
GTVFAVLSGQDAEFAIGLAIPVGLLMVQLDILARFTNTFFLHRIDSNIASGNISAVKRNIWYGALPWALSRAVPVFIMLT
FGQSVVDFILNEIPEWLMGGLRVAGGILPVVGIAILLRYLPTNKFVAYLIIGFVAAAYLKVPMLGVALIGVALAIIYFKQ
NFKNPVAAGANGAALVGEENEDGEYED
>Mature_267_residues
MDLAVWQIILLVILAACTILDALTLVIGLNFPVITGTLAGIIMGDMVLGLAIGATLQLMVLGVGTYGGASIPDFTTGAIV
GTVFAVLSGQDAEFAIGLAIPVGLLMVQLDILARFTNTFFLHRIDSNIASGNISAVKRNIWYGALPWALSRAVPVFIMLT
FGQSVVDFILNEIPEWLMGGLRVAGGILPVVGIAILLRYLPTNKFVAYLIIGFVAAAYLKVPMLGVALIGVALAIIYFKQ
NFKNPVAAGANGAALVGEENEDGEYED

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3715

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIIC type-4 domain [H]

Homologues:

Organism=Escherichia coli, GI1789528, Length=258, Percent_Identity=31.3953488372093, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1788121, Length=267, Percent_Identity=30.7116104868914, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004700
- InterPro:   IPR018404 [H]

Pfam domain/function: PF03609 EII-Sor [H]

EC number: NA

Molecular weight: Translated: 28139; Mature: 28139

Theoretical pI: Translated: 4.31; Mature: 4.31

Prosite motif: PS51106 PTS_EIIC_TYPE_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLAVWQIILLVILAACTILDALTLVIGLNFPVITGTLAGIIMGDMVLGLAIGATLQLMV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LGVGTYGGASIPDFTTGAIVGTVFAVLSGQDAEFAIGLAIPVGLLMVQLDILARFTNTFF
HCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHH
LHRIDSNIASGNISAVKRNIWYGALPWALSRAVPVFIMLTFGQSVVDFILNEIPEWLMGG
HHHHHCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRVAGGILPVVGIAILLRYLPTNKFVAYLIIGFVAAAYLKVPMLGVALIGVALAIIYFKQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NFKNPVAAGANGAALVGEENEDGEYED
HCCCCCCCCCCCCEEECCCCCCCCCCC
>Mature Secondary Structure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HCCCCCCCCCCCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503; 8932697 [H]