Click here to switch to the map view.

The map label for this gene is rhaB [H]

Identifier: 225861985

GI number: 225861985

Start: 2033280

End: 2034683

Strand: Reverse

Name: rhaB [H]

Synonym: SPT_2180

Alternate gene names: 225861985

Gene position: 2034683-2033280 (Counterclockwise)

Preceding gene: 225861987

Following gene: 225861984

Centisome position: 96.33

GC content: 35.68

Gene sequence:

>1404_bases
ATGGAAGCGGTTTTAGCAATAGATTTAGGTGCGACTTCTGGAAGAGCAATCGTTGGTTACCTTTCTGAAAATAAACTGGT
AATGGAAGAAATAAATCGCTTTTCTAATCTACCTATTAGAGTAAAAGGGCATTTATCTTGGGATATTGACTTTCTACTAG
CTAAAATTCTTGAAAGTATCCGCTTGGCTAATACTAGTTACAAGATTTTATCTATCGGTATTGACACATGGGGAGTTGAT
TTTGGACTGATTGATAATGAAGGTAAGCTGTTATTACAACCTGTTCATTATCGTGATGAAAGAACAAAGGGAGTGTTAAA
GGAAATATCTGAAATGACTGAATTAGAAAAACTGTATTCAGAGACAGGAAATCAGATTATGGAGATAAATACCTTGTTTC
AACTCTTTAAGGCACGTCAAGAATCTCCTGACTCTTTCTATAAGACCAATAAGATTCTTTTAATGCCAGATTTGTTTAAT
TATCTCTTGACAGGTAAGTTTGCTACAGAAAAAAGCATTGCTTCAACAACTCAATTATTTGATCCTAGGAGTCAAAATTG
GAATCAGAATATCTTAAAACTATTTGAATTGGATTCATCTTTACTTCCTGAAATTGTTTCAGAGGGAAATGTTCTTGGAA
GGATAAAAAAGGAGTATGGTTTAGGCGATATTCCTGTTGTGAATGTTTGTAGTCATGATACAGCAAGTGCGATTGTCTCA
GTACCTAAGACAGAAGGTAGTTTATTTATTTCATCAGGTACTTGGTCTTTGGTTGGAGTGGAACTTACTTCACCGATTCT
TACTACCGAATCCTTCAGTTATGGATTTACAAATGAAGTCGGTAAAGATGGAGTGATTACATTTCTGAAGAATTGTACAG
GGTTGTGGATCATAGAGGAACTAAGACGTTCATTTGAACGAAGAGGGAAAGCCTATTCTTTTGATGATATTAGGACAATG
GTGGAGAAAGAAAAAGAAAATCTTCCTCTGATTGATACTGAATCAACTGAATTTGCAACAGAATCTGATATGCACAAGAC
TTTGACAGAATATCTAGCTTATCATCATGAAACTAGAGAGTGGACAGATGGACAACTATTTAAGATTGTTTATGAAAGCC
TAGCTGAAACGTATAGGAAAGCGATAGAGTTACTAGAAGAACTAACTCATAAGGTTTATAAGAGGATATATGTGATTGGA
GGAGGTGCTAGAGCCAGTTACTTTAACCAAATGATTGCTGATAGAACTGGTAAAGAGGTTCTTACAGGTTCGACTGAGGG
TACAGCTGTGGGGAATATTGTTGTGCAGCTCATAGCTATGGGACAATTAAAAGGGATGGAAGAAGCTCACCATGTTATTG
AGGAGTTCCTACAATTAGAGAGTTATTACTCCCAAAAGAATTAA

Upstream 100 bases:

>100_bases
GGGTTAACATTTGAACATTATTCAAGTAAGCGTTCACATATTGAAAAAATAAAACGTGGGGATTATAATAAACTTAATCA
AGGACGAAGAGAGAAGAAAA

Downstream 100 bases:

>100_bases
AAAGATTGAGAGTTTGTAAATTTGCCTCCCTCCCCCTTCTTAAGTTTTGTACAAGAAGGGGGGATAATTGGTGAATTGAA
AAATATTTAGTGTTTTGATA

Product: rhamnulokinase (Rhamnulose kinase)

Products: NA

Alternate protein names: Rhamnulose kinase [H]

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MEAVLAIDLGATSGRAIVGYLSENKLVMEEINRFSNLPIRVKGHLSWDIDFLLAKILESIRLANTSYKILSIGIDTWGVD
FGLIDNEGKLLLQPVHYRDERTKGVLKEISEMTELEKLYSETGNQIMEINTLFQLFKARQESPDSFYKTNKILLMPDLFN
YLLTGKFATEKSIASTTQLFDPRSQNWNQNILKLFELDSSLLPEIVSEGNVLGRIKKEYGLGDIPVVNVCSHDTASAIVS
VPKTEGSLFISSGTWSLVGVELTSPILTTESFSYGFTNEVGKDGVITFLKNCTGLWIIEELRRSFERRGKAYSFDDIRTM
VEKEKENLPLIDTESTEFATESDMHKTLTEYLAYHHETREWTDGQLFKIVYESLAETYRKAIELLEELTHKVYKRIYVIG
GGARASYFNQMIADRTGKEVLTGSTEGTAVGNIVVQLIAMGQLKGMEEAHHVIEEFLQLESYYSQKN

Sequences:

>Translated_467_residues
MEAVLAIDLGATSGRAIVGYLSENKLVMEEINRFSNLPIRVKGHLSWDIDFLLAKILESIRLANTSYKILSIGIDTWGVD
FGLIDNEGKLLLQPVHYRDERTKGVLKEISEMTELEKLYSETGNQIMEINTLFQLFKARQESPDSFYKTNKILLMPDLFN
YLLTGKFATEKSIASTTQLFDPRSQNWNQNILKLFELDSSLLPEIVSEGNVLGRIKKEYGLGDIPVVNVCSHDTASAIVS
VPKTEGSLFISSGTWSLVGVELTSPILTTESFSYGFTNEVGKDGVITFLKNCTGLWIIEELRRSFERRGKAYSFDDIRTM
VEKEKENLPLIDTESTEFATESDMHKTLTEYLAYHHETREWTDGQLFKIVYESLAETYRKAIELLEELTHKVYKRIYVIG
GGARASYFNQMIADRTGKEVLTGSTEGTAVGNIVVQLIAMGQLKGMEEAHHVIEEFLQLESYYSQKN
>Mature_467_residues
MEAVLAIDLGATSGRAIVGYLSENKLVMEEINRFSNLPIRVKGHLSWDIDFLLAKILESIRLANTSYKILSIGIDTWGVD
FGLIDNEGKLLLQPVHYRDERTKGVLKEISEMTELEKLYSETGNQIMEINTLFQLFKARQESPDSFYKTNKILLMPDLFN
YLLTGKFATEKSIASTTQLFDPRSQNWNQNILKLFELDSSLLPEIVSEGNVLGRIKKEYGLGDIPVVNVCSHDTASAIVS
VPKTEGSLFISSGTWSLVGVELTSPILTTESFSYGFTNEVGKDGVITFLKNCTGLWIIEELRRSFERRGKAYSFDDIRTM
VEKEKENLPLIDTESTEFATESDMHKTLTEYLAYHHETREWTDGQLFKIVYESLAETYRKAIELLEELTHKVYKRIYVIG
GGARASYFNQMIADRTGKEVLTGSTEGTAVGNIVVQLIAMGQLKGMEEAHHVIEEFLQLESYYSQKN

Specific function: Metabolism of L-rhamnose; second step. [C]

COG id: COG1070

COG function: function code G; Sugar (pentulose and hexulose) kinases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rhamnulokinase family [H]

Homologues:

Organism=Escherichia coli, GI1790338, Length=470, Percent_Identity=31.9148936170213, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI1789168, Length=477, Percent_Identity=23.6897274633124, Blast_Score=132, Evalue=6e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000577
- InterPro:   IPR018485
- InterPro:   IPR018484
- InterPro:   IPR013449 [H]

Pfam domain/function: PF02782 FGGY_C; PF00370 FGGY_N [H]

EC number: =2.7.1.5 [H]

Molecular weight: Translated: 52852; Mature: 52852

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEAVLAIDLGATSGRAIVGYLSENKLVMEEINRFSNLPIRVKGHLSWDIDFLLAKILESI
CCEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
RLANTSYKILSIGIDTWGVDFGLIDNEGKLLLQPVHYRDERTKGVLKEISEMTELEKLYS
HHCCCCEEEEEEECCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
ETGNQIMEINTLFQLFKARQESPDSFYKTNKILLMPDLFNYLLTGKFATEKSIASTTQLF
HHCCCEEHHHHHHHHHHHHCCCCCHHHHCCCEEECHHHHHHHHCCCCHHHHHHHHHHHHC
DPRSQNWNQNILKLFELDSSLLPEIVSEGNVLGRIKKEYGLGDIPVVNVCSHDTASAIVS
CCCCCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCCHHHHHEE
VPKTEGSLFISSGTWSLVGVELTSPILTTESFSYGFTNEVGKDGVITFLKNCTGLWIIEE
CCCCCCCEEEECCCCEEEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHH
LRRSFERRGKAYSFDDIRTMVEKEKENLPLIDTESTEFATESDMHKTLTEYLAYHHETRE
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC
WTDGQLFKIVYESLAETYRKAIELLEELTHKVYKRIYVIGGGARASYFNQMIADRTGKEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHCCCCCHH
LTGSTEGTAVGNIVVQLIAMGQLKGMEEAHHVIEEFLQLESYYSQKN
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEAVLAIDLGATSGRAIVGYLSENKLVMEEINRFSNLPIRVKGHLSWDIDFLLAKILESI
CCEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
RLANTSYKILSIGIDTWGVDFGLIDNEGKLLLQPVHYRDERTKGVLKEISEMTELEKLYS
HHCCCCEEEEEEECCCCCCEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
ETGNQIMEINTLFQLFKARQESPDSFYKTNKILLMPDLFNYLLTGKFATEKSIASTTQLF
HHCCCEEHHHHHHHHHHHHCCCCCHHHHCCCEEECHHHHHHHHCCCCHHHHHHHHHHHHC
DPRSQNWNQNILKLFELDSSLLPEIVSEGNVLGRIKKEYGLGDIPVVNVCSHDTASAIVS
CCCCCCCCHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEECCCCHHHHHEE
VPKTEGSLFISSGTWSLVGVELTSPILTTESFSYGFTNEVGKDGVITFLKNCTGLWIIEE
CCCCCCCEEEECCCCEEEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHH
LRRSFERRGKAYSFDDIRTMVEKEKENLPLIDTESTEFATESDMHKTLTEYLAYHHETRE
HHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCC
WTDGQLFKIVYESLAETYRKAIELLEELTHKVYKRIYVIGGGARASYFNQMIADRTGKEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHCCCCCHH
LTGSTEGTAVGNIVVQLIAMGQLKGMEEAHHVIEEFLQLESYYSQKN
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]