| Definition | Brucella melitensis ATCC 23457 chromosome chromosome II, complete sequence. |
|---|---|
| Accession | NC_012442 |
| Length | 1,185,518 |
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The map label for this gene is rbtD [H]
Identifier: 225686116
GI number: 225686116
Start: 249237
End: 249965
Strand: Direct
Name: rbtD [H]
Synonym: BMEA_B0269
Alternate gene names: 225686116
Gene position: 249237-249965 (Clockwise)
Preceding gene: 225686115
Following gene: 225686117
Centisome position: 21.02
GC content: 57.75
Gene sequence:
>729_bases ATGGCTCAGGATCTCAATGGAAGAGTTGCAGCTGTAACGGGTGCTGCCTCCGGTATCGGCTTTGAATGTGCAAAGCATAT GATTGGGGCGGGCATAACCGTGTTTCTTGTCGACCGCGACGAGAACGCGCTTGCGGAAAAGTGCGTTGAGCTTGGCGACA AGGCCAAACCGCTGGTCGTCGATCTGCTCGATCCGGCATCCGTCGCCACCATGATGCCGCAGATTCTTGAACAGGCAGGC CAGCTCGATATTTTCCACGCCAATGCCGGCTCCTATATTGGCGGGCCGCTCTGGGAGGGCGATCCGGATGCATGGGATCG CATGTTGAACCTCAATATTAATGCGGCTTTCCGTACCGTCCATGCCGTTCTGCCGCATATGATGGAACGCAAGACTGGCG ACATCATCATGACCAGCTCTGTTGCTGGCGTCGTGCCGGTGATATGGGAACCGATTTATACGGCGTCCAAACATGCCGTG CAGGCTTTCGTGCACACGGTTCGCCGTCAGGTCGCCCCGCATGGTATTCGCGTTGGCGGTGTTCTGCCGGGCCCGGTCGT CACTGCGCTCATCAGCGACTGGCCGCAAGCCAAGCTCGATGAGGCGCTGGCGGCAGGCAGCCTGATGGAGCCGAAAGAGG TTGCGGAATCCGTGATGTTCATGCTGACACGCCCGCGCAATATCACCATCCGCGATCTGGTTATTCTTCCGCAAAGTCTC GATCTCTAA
Upstream 100 bases:
>100_bases CAATTCCATGCGGTCGTTTCTTCCGTTCAGCCGAAAAATACCCTCACGCCGAACCGTAACTTAATTCGTCACCACAGCCT AAACTTGTAAGGACTGAAAA
Downstream 100 bases:
>100_bases ATGGGAGCGACCATGACCAACTATTATCTGGGCGTCGATGTCGGCACCGGAAGCGCCCGGGCCGGGCTGTTCGACGCGGG TGGCACCATGCTTGCATCGG
Product: Ribitol 2-dehydrogenase
Products: NA
Alternate protein names: RDH [H]
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MAQDLNGRVAAVTGAASGIGFECAKHMIGAGITVFLVDRDENALAEKCVELGDKAKPLVVDLLDPASVATMMPQILEQAG QLDIFHANAGSYIGGPLWEGDPDAWDRMLNLNINAAFRTVHAVLPHMMERKTGDIIMTSSVAGVVPVIWEPIYTASKHAV QAFVHTVRRQVAPHGIRVGGVLPGPVVTALISDWPQAKLDEALAAGSLMEPKEVAESVMFMLTRPRNITIRDLVILPQSL DL
Sequences:
>Translated_242_residues MAQDLNGRVAAVTGAASGIGFECAKHMIGAGITVFLVDRDENALAEKCVELGDKAKPLVVDLLDPASVATMMPQILEQAG QLDIFHANAGSYIGGPLWEGDPDAWDRMLNLNINAAFRTVHAVLPHMMERKTGDIIMTSSVAGVVPVIWEPIYTASKHAV QAFVHTVRRQVAPHGIRVGGVLPGPVVTALISDWPQAKLDEALAAGSLMEPKEVAESVMFMLTRPRNITIRDLVILPQSL DL >Mature_241_residues AQDLNGRVAAVTGAASGIGFECAKHMIGAGITVFLVDRDENALAEKCVELGDKAKPLVVDLLDPASVATMMPQILEQAGQ LDIFHANAGSYIGGPLWEGDPDAWDRMLNLNINAAFRTVHAVLPHMMERKTGDIIMTSSVAGVVPVIWEPIYTASKHAVQ AFVHTVRRQVAPHGIRVGGVLPGPVVTALISDWPQAKLDEALAAGSLMEPKEVAESVMFMLTRPRNITIRDLVILPQSLD L
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG4221
COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI20149619, Length=246, Percent_Identity=30.8943089430894, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI7706318, Length=198, Percent_Identity=32.3232323232323, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=29.5081967213115, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI31542939, Length=197, Percent_Identity=29.4416243654822, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=32.4468085106383, Blast_Score=81, Evalue=7e-16, Organism=Homo sapiens, GI15277342, Length=243, Percent_Identity=29.2181069958848, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI5031737, Length=189, Percent_Identity=29.6296296296296, Blast_Score=79, Evalue=3e-15, Organism=Homo sapiens, GI157739938, Length=239, Percent_Identity=25.5230125523013, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=30, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI142976729, Length=244, Percent_Identity=26.2295081967213, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI40254992, Length=218, Percent_Identity=25.2293577981651, Blast_Score=75, Evalue=4e-14, Organism=Homo sapiens, GI223718074, Length=207, Percent_Identity=28.9855072463768, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI4503817, Length=230, Percent_Identity=28.2608695652174, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI32483357, Length=228, Percent_Identity=25.4385964912281, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI226371731, Length=191, Percent_Identity=29.3193717277487, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI4758504, Length=240, Percent_Identity=25.8333333333333, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI7705855, Length=190, Percent_Identity=31.5789473684211, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI66933014, Length=128, Percent_Identity=31.25, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI209862901, Length=262, Percent_Identity=26.7175572519084, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI19923983, Length=262, Percent_Identity=26.7175572519084, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI7705925, Length=234, Percent_Identity=26.9230769230769, Blast_Score=66, Evalue=2e-11, Organism=Escherichia coli, GI1787335, Length=221, Percent_Identity=30.7692307692308, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI87082100, Length=231, Percent_Identity=32.034632034632, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1787820, Length=235, Percent_Identity=28.5106382978723, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87082160, Length=187, Percent_Identity=28.8770053475936, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=25.8064516129032, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1786701, Length=224, Percent_Identity=28.125, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1789208, Length=206, Percent_Identity=28.6407766990291, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1788459, Length=186, Percent_Identity=26.8817204301075, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1790717, Length=232, Percent_Identity=27.5862068965517, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1787526, Length=194, Percent_Identity=30.4123711340206, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787905, Length=227, Percent_Identity=26.8722466960352, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI2367365, Length=186, Percent_Identity=29.0322580645161, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789378, Length=192, Percent_Identity=31.7708333333333, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI71994604, Length=241, Percent_Identity=30.7053941908714, Blast_Score=95, Evalue=3e-20, Organism=Caenorhabditis elegans, GI71994600, Length=245, Percent_Identity=28.1632653061224, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17560676, Length=230, Percent_Identity=27.8260869565217, Blast_Score=84, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17544670, Length=246, Percent_Identity=26.8292682926829, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17555706, Length=227, Percent_Identity=25.9911894273128, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17564282, Length=162, Percent_Identity=30.2469135802469, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI72000259, Length=247, Percent_Identity=27.1255060728745, Blast_Score=75, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560332, Length=243, Percent_Identity=26.7489711934156, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17508895, Length=195, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17562910, Length=246, Percent_Identity=25.2032520325203, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17538480, Length=249, Percent_Identity=26.5060240963855, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17559104, Length=242, Percent_Identity=26.4462809917355, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560150, Length=241, Percent_Identity=24.0663900414938, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17531453, Length=244, Percent_Identity=25.8196721311475, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193203115, Length=168, Percent_Identity=29.7619047619048, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17563726, Length=245, Percent_Identity=25.3061224489796, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17551412, Length=257, Percent_Identity=26.0700389105058, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI25147288, Length=230, Percent_Identity=26.5217391304348, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193204405, Length=243, Percent_Identity=25.5144032921811, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193203117, Length=164, Percent_Identity=29.8780487804878, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17562990, Length=241, Percent_Identity=23.2365145228216, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=23.0769230769231, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17562908, Length=248, Percent_Identity=24.1935483870968, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17555612, Length=267, Percent_Identity=25.0936329588015, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17565030, Length=250, Percent_Identity=27.2, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17560220, Length=247, Percent_Identity=24.6963562753036, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6322067, Length=191, Percent_Identity=27.2251308900524, Blast_Score=83, Evalue=4e-17, Organism=Saccharomyces cerevisiae, GI6322227, Length=227, Percent_Identity=28.6343612334802, Blast_Score=67, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=252, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=7e-12, Organism=Drosophila melanogaster, GI23397609, Length=236, Percent_Identity=32.6271186440678, Blast_Score=101, Evalue=4e-22, Organism=Drosophila melanogaster, GI21358495, Length=245, Percent_Identity=30.6122448979592, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI21357041, Length=229, Percent_Identity=29.2576419213974, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI28571526, Length=235, Percent_Identity=29.3617021276596, Blast_Score=87, Evalue=9e-18, Organism=Drosophila melanogaster, GI24639444, Length=224, Percent_Identity=29.9107142857143, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI21355319, Length=232, Percent_Identity=27.5862068965517, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24641232, Length=248, Percent_Identity=29.0322580645161, Blast_Score=85, Evalue=5e-17, Organism=Drosophila melanogaster, GI24644339, Length=231, Percent_Identity=29.4372294372294, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI281364892, Length=227, Percent_Identity=29.9559471365639, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI21355631, Length=174, Percent_Identity=29.8850574712644, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI116007236, Length=245, Percent_Identity=26.530612244898, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI24648944, Length=239, Percent_Identity=28.8702928870293, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI28571387, Length=243, Percent_Identity=25.9259259259259, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24663911, Length=245, Percent_Identity=27.3469387755102, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24640492, Length=224, Percent_Identity=25.8928571428571, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24649181, Length=232, Percent_Identity=26.2931034482759, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI24581726, Length=143, Percent_Identity=30.7692307692308, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI116007234, Length=245, Percent_Identity=27.3469387755102, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24644337, Length=231, Percent_Identity=30.3030303030303, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24643142, Length=228, Percent_Identity=28.5087719298246, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=29.0155440414508, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI17737361, Length=234, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI116007238, Length=199, Percent_Identity=26.1306532663317, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=26.865671641791, Blast_Score=67, Evalue=8e-12, Organism=Drosophila melanogaster, GI21356301, Length=232, Percent_Identity=27.5862068965517, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI24641388, Length=247, Percent_Identity=27.9352226720648, Blast_Score=65, Evalue=5e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.56 [H]
Molecular weight: Translated: 25973; Mature: 25841
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQDLNGRVAAVTGAASGIGFECAKHMIGAGITVFLVDRDENALAEKCVELGDKAKPLVV CCCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCCCEEE DLLDPASVATMMPQILEQAGQLDIFHANAGSYIGGPLWEGDPDAWDRMLNLNINAAFRTV EECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHH HAVLPHMMERKTGDIIMTSSVAGVVPVIWEPIYTASKHAVQAFVHTVRRQVAPHGIRVGG HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC VLPGPVVTALISDWPQAKLDEALAAGSLMEPKEVAESVMFMLTRPRNITIRDLVILPQSL CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC DL CC >Mature Secondary Structure AQDLNGRVAAVTGAASGIGFECAKHMIGAGITVFLVDRDENALAEKCVELGDKAKPLVV CCCCCCCEEEEECCCCCCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCCCCEEE DLLDPASVATMMPQILEQAGQLDIFHANAGSYIGGPLWEGDPDAWDRMLNLNINAAFRTV EECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHH HAVLPHMMERKTGDIIMTSSVAGVVPVIWEPIYTASKHAVQAFVHTVRRQVAPHGIRVGG HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECC VLPGPVVTALISDWPQAKLDEALAAGSLMEPKEVAESVMFMLTRPRNITIRDLVILPQSL CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC DL CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3904726; 2933028; 3891331 [H]