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The map label for this gene is xylF [H]

Identifier: 225686113

GI number: 225686113

Start: 245490

End: 246542

Strand: Direct

Name: xylF [H]

Synonym: BMEA_B0266

Alternate gene names: 225686113

Gene position: 245490-246542 (Clockwise)

Preceding gene: 225686111

Following gene: 225686114

Centisome position: 20.71

GC content: 56.41

Gene sequence:

>1053_bases
ATGAAGGGATTGAAGATGACGGGCGCGCTTGCGGGCGTGCTGATGATGGCCGCTACTACGGCCCATGCGGAGGTCAAGGA
TGCAGTGGTTGGCTTTTTAATGCCAGACCAGGCTTCAACGCGCTATGAGGAACGCGATTATCCGGGCTTTGCCGCACAGA
TGAAAACGCTGTGCGAGAGCTGCAAGGTTCTCTATCTCAATGCCGATGGCGATGCGACCAAGCAGCAGCAACAGTTCAAC
TCGGTCATTTCGCAGGGCGCAAAGGTAATCGTGCTGGATGCGGTGGATACGGCTGCGGCTGCTTCGCTGGTCAAGCTTGC
CCAGTCTCAGGGTATCAAAGTTATCGCTTACGACCGCCCGATCCCGGATGCTAAATCGGATTTTTACGTATCGTTCGACA
ATGAGGCTATCGGCAAGTCGATTGCGGAATCGCTGGTCAAACACCTGAAGGACAAGGGCGTGCCGACTGACAAGGGCGGC
GTTTTGCAGATCAATGGTTCGCCGACTGATGCCGCCGCCGGCCTCATTAAGAATGGTATTCATGCCGGTCTGAAGGATAG
CGGCTACAAGACGCTTGCCGAATATGACACGCCGGAATGGGCGCCGAGCAAGGCACAGCAGTGGGCAAGCGGCCAGATTA
CCCGTTTTGGTGATCAGATCGTCGGCGTTGTCGCCGCCAATGATGGCACAGCGGGTGGTGCAATTGCTGCGATGAAGGCT
GCTGGCGTTGATCCCCTGCCGCCGGTGACGGGCAATGATGCGACCATCGCCGCACTTCAGCTCATCATTTCAGGCGATCA
GTACAATACGATCAACAAGCCGTCGGAAATCGTTGCATCGGAAGCTGCGCGTGTTGCTGTCCAGCTTCTGGGGGACAAAG
CGCCGAAGGCCGAGACCACGCTCTACAACACGCCGTCGAAGCTGTTTGTGCCAGTGGTTGTGACGGCTGAAAATCTCAAG
GCTGAAATTATCGACAAGAAGGTGGTTCCCGCCGCCACGCTCTGCGTGGACCGTTATGCTGAAGGCTGCAAGAAGCTTGG
TATCACCAACTAG

Upstream 100 bases:

>100_bases
TTTTGCGGTTGCCCGTTTCAGTACTTGCGGGGCCGGTTCGTTCACAAATTTTTTGAACCGCATGCCGGCACAAGAATAGA
CGATCATCAGGAGGAGTGTC

Downstream 100 bases:

>100_bases
TGGTCTGATTCCAACATTTGCATCCCTCGGTTCAAGCGTCGAGTAAATGTTGGAATCACAAAGACCACTAGTAAGTATAT
GTATCTAGTGGATTTTTAGA

Product: multiple sugar-binding periplasmic receptor chvE

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 350

Protein sequence:

>350_residues
MKGLKMTGALAGVLMMAATTAHAEVKDAVVGFLMPDQASTRYEERDYPGFAAQMKTLCESCKVLYLNADGDATKQQQQFN
SVISQGAKVIVLDAVDTAAAASLVKLAQSQGIKVIAYDRPIPDAKSDFYVSFDNEAIGKSIAESLVKHLKDKGVPTDKGG
VLQINGSPTDAAAGLIKNGIHAGLKDSGYKTLAEYDTPEWAPSKAQQWASGQITRFGDQIVGVVAANDGTAGGAIAAMKA
AGVDPLPPVTGNDATIAALQLIISGDQYNTINKPSEIVASEAARVAVQLLGDKAPKAETTLYNTPSKLFVPVVVTAENLK
AEIIDKKVVPAATLCVDRYAEGCKKLGITN

Sequences:

>Translated_350_residues
MKGLKMTGALAGVLMMAATTAHAEVKDAVVGFLMPDQASTRYEERDYPGFAAQMKTLCESCKVLYLNADGDATKQQQQFN
SVISQGAKVIVLDAVDTAAAASLVKLAQSQGIKVIAYDRPIPDAKSDFYVSFDNEAIGKSIAESLVKHLKDKGVPTDKGG
VLQINGSPTDAAAGLIKNGIHAGLKDSGYKTLAEYDTPEWAPSKAQQWASGQITRFGDQIVGVVAANDGTAGGAIAAMKA
AGVDPLPPVTGNDATIAALQLIISGDQYNTINKPSEIVASEAARVAVQLLGDKAPKAETTLYNTPSKLFVPVVVTAENLK
AEIIDKKVVPAATLCVDRYAEGCKKLGITN
>Mature_350_residues
MKGLKMTGALAGVLMMAATTAHAEVKDAVVGFLMPDQASTRYEERDYPGFAAQMKTLCESCKVLYLNADGDATKQQQQFN
SVISQGAKVIVLDAVDTAAAASLVKLAQSQGIKVIAYDRPIPDAKSDFYVSFDNEAIGKSIAESLVKHLKDKGVPTDKGG
VLQINGSPTDAAAGLIKNGIHAGLKDSGYKTLAEYDTPEWAPSKAQQWASGQITRFGDQIVGVVAANDGTAGGAIAAMKA
AGVDPLPPVTGNDATIAALQLIISGDQYNTINKPSEIVASEAARVAVQLLGDKAPKAETTLYNTPSKLFVPVVVTAENLK
AEIIDKKVVPAATLCVDRYAEGCKKLGITN

Specific function: Involved in the high-affinity D-xylose membrane transport system. Binds with high affinity to xylose [H]

COG id: COG4213

COG function: function code G; ABC-type xylose transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1789990, Length=312, Percent_Identity=35.8974358974359, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1788473, Length=220, Percent_Identity=29.0909090909091, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761
- InterPro:   IPR013456 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 36626; Mature: 36626

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLKMTGALAGVLMMAATTAHAEVKDAVVGFLMPDQASTRYEERDYPGFAAQMKTLCES
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHC
CKVLYLNADGDATKQQQQFNSVISQGAKVIVLDAVDTAAAASLVKLAQSQGIKVIAYDRP
CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCC
IPDAKSDFYVSFDNEAIGKSIAESLVKHLKDKGVPTDKGGVLQINGSPTDAAAGLIKNGI
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHH
HAGLKDSGYKTLAEYDTPEWAPSKAQQWASGQITRFGDQIVGVVAANDGTAGGAIAAMKA
HCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCEECCCEEEEEEEECCCCCCCHHHHHHH
AGVDPLPPVTGNDATIAALQLIISGDQYNTINKPSEIVASEAARVAVQLLGDKAPKAETT
CCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCE
LYNTPSKLFVPVVVTAENLKAEIIDKKVVPAATLCVDRYAEGCKKLGITN
EECCCCCEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKGLKMTGALAGVLMMAATTAHAEVKDAVVGFLMPDQASTRYEERDYPGFAAQMKTLCES
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHHHC
CKVLYLNADGDATKQQQQFNSVISQGAKVIVLDAVDTAAAASLVKLAQSQGIKVIAYDRP
CEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCC
IPDAKSDFYVSFDNEAIGKSIAESLVKHLKDKGVPTDKGGVLQINGSPTDAAAGLIKNGI
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHHH
HAGLKDSGYKTLAEYDTPEWAPSKAQQWASGQITRFGDQIVGVVAANDGTAGGAIAAMKA
HCCCCCCCCHHHHHCCCCCCCCHHHHHHCCCCCEECCCEEEEEEEECCCCCCCHHHHHHH
AGVDPLPPVTGNDATIAALQLIISGDQYNTINKPSEIVASEAARVAVQLLGDKAPKAETT
CCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCE
LYNTPSKLFVPVVVTAENLKAEIIDKKVVPAATLCVDRYAEGCKKLGITN
EECCCCCEEEEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 8581399; 9298646 [H]