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The map label for this gene is ydfH [H]

Identifier: 225686088

GI number: 225686088

Start: 224527

End: 225228

Strand: Direct

Name: ydfH [H]

Synonym: BMEA_B0239

Alternate gene names: 225686088

Gene position: 224527-225228 (Clockwise)

Preceding gene: 225686087

Following gene: 225686089

Centisome position: 18.94

GC content: 58.55

Gene sequence:

>702_bases
ATGACGGAAAGCGAGCAAAATCCGATGGAGCGTAAACGTGGTTCCGGCGTCAGGATGGTCTATGACCTTTTGCGGGATGA
GATACTCGATCTGAAGCTTGCTCCCGGCAGCCCAATCGATGAAGTGCAGCTGGCCGAACGGTTCGGCATGTCGCGCACGC
CTATTCGCGAGGCGCTGGTTCGCCTGTCGAGCGAAGGTCTAGTCGAAACCCTGCCCAACCGCTCGACCATGGTGTCGAAC
ATCGATTTCCTGAACATGCACACTTTCTTCGATGCGCTGGTGCTGATGTATCGCGTGACGACACGGCTTGCCGCGCAATA
TCACCGCCCGGAGGACCTGAGGATTATCCATGAATTGCAGGCGCAATTCACCGCCGCCGTGGATGCCCAGAACGCGCTTG
GCATGATTGCTACCAATGCCGCTTTTCACGCGGCCATAGCCGATGCGGGCCGCAATGCCTATTTTACCGGGCTGTTCAAT
CGCCTGCTGGATGAGGGGCGTCGCATCATGCGGCTTTACTACCAGTCCTATGACGACCGCCTGCCGCGCCGCTTCGTGGA
AGAGCATGAGGAAATCATCGCGGCCATTGAGGCGCGGGACGTGGCGCAAGCCGACCGTCTGGGCAAAATCCATGCCGAGC
AGATCGTGGAGCAGGTGCGCAAGCTCTTCGAGAGGAAGGCCGTCCTGGATATTGAGCTTTAG

Upstream 100 bases:

>100_bases
ACCATCACTGGAACCGAACGATCATTGCGCGCCTTGTGCGTTGATCCTTTACAATGGGGGCGGTAGGTGTAACGGATCGC
GGTTGGACAAAGGTTTCGGG

Downstream 100 bases:

>100_bases
CTTTGTATTTTTCTTGTCGACAAGAAAAATTTAAGCTAGATTGCCTTCGATCGAGGCACGGATGAACCATGCCGGCCGAT
AGGAAATTGAGGAGTGTGAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MTESEQNPMERKRGSGVRMVYDLLRDEILDLKLAPGSPIDEVQLAERFGMSRTPIREALVRLSSEGLVETLPNRSTMVSN
IDFLNMHTFFDALVLMYRVTTRLAAQYHRPEDLRIIHELQAQFTAAVDAQNALGMIATNAAFHAAIADAGRNAYFTGLFN
RLLDEGRRIMRLYYQSYDDRLPRRFVEEHEEIIAAIEARDVAQADRLGKIHAEQIVEQVRKLFERKAVLDIEL

Sequences:

>Translated_233_residues
MTESEQNPMERKRGSGVRMVYDLLRDEILDLKLAPGSPIDEVQLAERFGMSRTPIREALVRLSSEGLVETLPNRSTMVSN
IDFLNMHTFFDALVLMYRVTTRLAAQYHRPEDLRIIHELQAQFTAAVDAQNALGMIATNAAFHAAIADAGRNAYFTGLFN
RLLDEGRRIMRLYYQSYDDRLPRRFVEEHEEIIAAIEARDVAQADRLGKIHAEQIVEQVRKLFERKAVLDIEL
>Mature_232_residues
TESEQNPMERKRGSGVRMVYDLLRDEILDLKLAPGSPIDEVQLAERFGMSRTPIREALVRLSSEGLVETLPNRSTMVSNI
DFLNMHTFFDALVLMYRVTTRLAAQYHRPEDLRIIHELQAQFTAAVDAQNALGMIATNAAFHAAIADAGRNAYFTGLFNR
LLDEGRRIMRLYYQSYDDRLPRRFVEEHEEIIAAIEARDVAQADRLGKIHAEQIVEQVRKLFERKAVLDIEL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=210, Percent_Identity=24.7619047619048, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 26734; Mature: 26603

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESEQNPMERKRGSGVRMVYDLLRDEILDLKLAPGSPIDEVQLAERFGMSRTPIREALV
CCCCCCCHHHHHCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHCCCCCCHHHHHHH
RLSSEGLVETLPNRSTMVSNIDFLNMHTFFDALVLMYRVTTRLAAQYHRPEDLRIIHELQ
HHCCCCHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AQFTAAVDAQNALGMIATNAAFHAAIADAGRNAYFTGLFNRLLDEGRRIMRLYYQSYDDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPRRFVEEHEEIIAAIEARDVAQADRLGKIHAEQIVEQVRKLFERKAVLDIEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TESEQNPMERKRGSGVRMVYDLLRDEILDLKLAPGSPIDEVQLAERFGMSRTPIREALV
CCCCCCHHHHHCCCCHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHCCCCCCHHHHHHH
RLSSEGLVETLPNRSTMVSNIDFLNMHTFFDALVLMYRVTTRLAAQYHRPEDLRIIHELQ
HHCCCCHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AQFTAAVDAQNALGMIATNAAFHAAIADAGRNAYFTGLFNRLLDEGRRIMRLYYQSYDDR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPRRFVEEHEEIIAAIEARDVAQADRLGKIHAEQIVEQVRKLFERKAVLDIEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]