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The map label for this gene is yciR [C]

Identifier: 225686086

GI number: 225686086

Start: 221962

End: 223137

Strand: Reverse

Name: yciR [C]

Synonym: BMEA_B0235

Alternate gene names: 225686086

Gene position: 223137-221962 (Counterclockwise)

Preceding gene: 225686090

Following gene: 225686081

Centisome position: 18.82

GC content: 53.23

Gene sequence:

>1176_bases
ATGACGTCAAGCCAATGCTTCTTATGCCTTATCCTTCTATTGCTGTTTATTGGCTTTACCGCCTTCGCAATACCCAGAAT
TTTGGTCAACCGAAAGGTCCACAAGGCTATCGTTGATCTGAAGGACTATGTTTCGCACGCCTCGAACCAGAATGTGCGAA
TGACCGGCGAAGTGGATATTCTGCGGGCTATCGTCAAAAGACACCCATTAGAACAGACGCTCACCATGCTTTGCCGGTTT
GTGGAAAAGCAGATTCCCGGTACACGATGCTCTGTGCTGATCCTTGATCCAAGCGGGAAAAAAGTCGGCAAATCCATCGC
CCCCAGCCTGCCCACCCATTACAACAAAGCGCTGATCGGGCTTGAAATCGGGCCGAATATTGGCTCTTGCGGGGCGGCTA
TGTTTTTGCGCCGGCCCGTCATCATCAGCGATATTGCAACCCATCCAAACTGGCTTTCCTTCCGCGATCTGGCTTTGCCG
TGCGGCTTGCGGGCCTGCTGGTCCATGCCAGCCATCAACGGTGCGGGAAAAGTGCTGGGGGCTTTTGCAATCTACAGCGA
CACGCCACGCACACCGGCGCAAAATGAGCTTATGGTCGGGCAGATCGCGGTTGAGCTTTCCATGATAGCCGTCGATACGG
CACAGACGCAGGAACGGCTGGCCAGTCAGGCGATGCATGACGACCTGACCCAATTGCCGAATCGTCGCTATATCGGAAAG
CTGCTGACGCAGAAAAAGTCGGCGCGCGACGGGCTTTCACGGGACGGCTTCCTGCTGCTGATCGATCTCGACGATTTCAA
GCCAGTCAACGACACTTATGGACATCTCACCGGGGACGAAGTGCTAAAGGAAGTAGCCCAGCGCCTGCTGCGCATCGTCT
GTGAAGAGGATACGGTCGCACGCATGGGCGGCGATGAGTTCATGATCGTGCTGAATGGCGGCACATCGAAAGAACAAACC
GACATTATCGCCAGCAGAATTATCCGTGAAGTTTCAAAGCCGATTGAGGTCTCGCAGCATAAACCTGTAAAAGTGGGATG
CAGTATCGGCATTGTCAGCACCAGGGAATGGCGTTCCAACAAATATATCTTCGATTGTGCCGACAAGGCGATGTACAGCG
CCAAATCCAAAGGCAAGAACCGGTTTGAATATTTTGAAGAAAAGCAGGCGGCGTAA

Upstream 100 bases:

>100_bases
TGAGCCATAATGGCATTTTGATAGCAACGCAGCCTTCAAGAAAACACTCTTCTTGGCAATTGCCTCTATCATGCGAGTCT
GCATGTGAGGTCTATACTTT

Downstream 100 bases:

>100_bases
GCGCGGCGCACTTTTGCTCGACCGCTCTAATTTATTTTGCCGCTATCCGAGTTTTTGCAGCGGATAAGGGTGGCCTGAAA
ACAGGGCGCCGACCGGCTGC

Product: GAF/GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 390

Protein sequence:

>391_residues
MTSSQCFLCLILLLLFIGFTAFAIPRILVNRKVHKAIVDLKDYVSHASNQNVRMTGEVDILRAIVKRHPLEQTLTMLCRF
VEKQIPGTRCSVLILDPSGKKVGKSIAPSLPTHYNKALIGLEIGPNIGSCGAAMFLRRPVIISDIATHPNWLSFRDLALP
CGLRACWSMPAINGAGKVLGAFAIYSDTPRTPAQNELMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGK
LLTQKKSARDGLSRDGFLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTSKEQT
DIIASRIIREVSKPIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAKSKGKNRFEYFEEKQAA

Sequences:

>Translated_391_residues
MTSSQCFLCLILLLLFIGFTAFAIPRILVNRKVHKAIVDLKDYVSHASNQNVRMTGEVDILRAIVKRHPLEQTLTMLCRF
VEKQIPGTRCSVLILDPSGKKVGKSIAPSLPTHYNKALIGLEIGPNIGSCGAAMFLRRPVIISDIATHPNWLSFRDLALP
CGLRACWSMPAINGAGKVLGAFAIYSDTPRTPAQNELMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGK
LLTQKKSARDGLSRDGFLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTSKEQT
DIIASRIIREVSKPIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAKSKGKNRFEYFEEKQAA
>Mature_390_residues
TSSQCFLCLILLLLFIGFTAFAIPRILVNRKVHKAIVDLKDYVSHASNQNVRMTGEVDILRAIVKRHPLEQTLTMLCRFV
EKQIPGTRCSVLILDPSGKKVGKSIAPSLPTHYNKALIGLEIGPNIGSCGAAMFLRRPVIISDIATHPNWLSFRDLALPC
GLRACWSMPAINGAGKVLGAFAIYSDTPRTPAQNELMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGKL
LTQKKSARDGLSRDGFLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVARMGGDEFMIVLNGGTSKEQTD
IIASRIIREVSKPIEVSQHKPVKVGCSIGIVSTREWRSNKYIFDCADKAMYSAKSKGKNRFEYFEEKQAA

Specific function: Unknown

COG id: COG2203

COG function: function code T; FOG: GAF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=172, Percent_Identity=38.3720930232558, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1788381, Length=177, Percent_Identity=35.0282485875706, Blast_Score=95, Evalue=8e-21,
Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=35.4037267080745, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1786584, Length=194, Percent_Identity=29.3814432989691, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=35.1851851851852, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=35.8024691358025, Blast_Score=83, Evalue=4e-17,
Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=35.7575757575758, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87082007, Length=176, Percent_Identity=29.5454545454545, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787816, Length=163, Percent_Identity=31.2883435582822, Blast_Score=82, Evalue=7e-17,
Organism=Escherichia coli, GI87081977, Length=159, Percent_Identity=34.5911949685535, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=32.2981366459627, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI1787802, Length=197, Percent_Identity=32.48730964467, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788085, Length=183, Percent_Identity=31.1475409836066, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=168, Percent_Identity=29.1666666666667, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 43363; Mature: 43232

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSSQCFLCLILLLLFIGFTAFAIPRILVNRKVHKAIVDLKDYVSHASNQNVRMTGEVDI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHH
LRAIVKRHPLEQTLTMLCRFVEKQIPGTRCSVLILDPSGKKVGKSIAPSLPTHYNKALIG
HHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCEEEE
LEIGPNIGSCGAAMFLRRPVIISDIATHPNWLSFRDLALPCGLRACWSMPAINGAGKVLG
EEECCCCCCHHHHHHHHCCHHHHHHCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCHHHHH
AFAIYSDTPRTPAQNELMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGK
HHEEECCCCCCCCCCCEEHHHHHHEEHHHEECHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLTQKKSARDGLSRDGFLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVA
HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
RMGGDEFMIVLNGGTSKEQTDIIASRIIREVSKPIEVSQHKPVKVGCSIGIVSTREWRSN
HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEEEEECCCCCCC
KYIFDCADKAMYSAKSKGKNRFEYFEEKQAA
CEEEECHHHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure 
TSSQCFLCLILLLLFIGFTAFAIPRILVNRKVHKAIVDLKDYVSHASNQNVRMTGEVDI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHH
LRAIVKRHPLEQTLTMLCRFVEKQIPGTRCSVLILDPSGKKVGKSIAPSLPTHYNKALIG
HHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCEEEE
LEIGPNIGSCGAAMFLRRPVIISDIATHPNWLSFRDLALPCGLRACWSMPAINGAGKVLG
EEECCCCCCHHHHHHHHCCHHHHHHCCCCCCCCHHHHHCCCCHHHHHCCCCCCCCHHHHH
AFAIYSDTPRTPAQNELMVGQIAVELSMIAVDTAQTQERLASQAMHDDLTQLPNRRYIGK
HHEEECCCCCCCCCCCEEHHHHHHEEHHHEECHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LLTQKKSARDGLSRDGFLLLIDLDDFKPVNDTYGHLTGDEVLKEVAQRLLRIVCEEDTVA
HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
RMGGDEFMIVLNGGTSKEQTDIIASRIIREVSKPIEVSQHKPVKVGCSIGIVSTREWRSN
HCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEEEEECCCCCCC
KYIFDCADKAMYSAKSKGKNRFEYFEEKQAA
CEEEECHHHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]