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The map label for this gene is yqhC [H]

Identifier: 222527359

GI number: 222527359

Start: 5134758

End: 5135702

Strand: Direct

Name: yqhC [H]

Synonym: Chy400_4148

Alternate gene names: 222527359

Gene position: 5134758-5135702 (Clockwise)

Preceding gene: 222527355

Following gene: 222527362

Centisome position: 97.45

GC content: 50.05

Gene sequence:

>945_bases
ATGTTAGCCGTAGCAGATCCTTCAACAGTCAGGGAAACCCCCATTGCCGGCAAGCGCGCAGCATTGACAGAATACGTTCT
CCGGCTGTTTCGTCAATACGAGAGTGATACTCTCGAGCTTCCTGGTGGGTTGCGCTTATACTACACTACCAGACCTACAT
CCAAACGTCATGGTGTGTCTACACCAGCCCTATGTGTCGTGCTACAAGGTGCAAAAGAAGTAGTTCTGGGCAGTGACCGA
TATTGCTACGATGCTCAACATTATCTGATTACCGCCGCTGCATTACCCATTACTACGCGAGTGATCGCCGCCTCACCTGA
ACAACCATATTTGGGCATCGTGTTACAGCTTGATCCTGCACTTGTAGGATCAGTGATTGCTGAAGCAGGACAATCTGGTC
TGACCAATCGCTCTGTCTGCGCTTTTCATGTCAGTCCCCTGGAGGGGAAACTACTCGATGCGGTCACTCGTCTAGTGAGA
CTAGCCGAGGATCCTCCTGAAGAGGCGAATTTTCTGCGCCCATTGATCGTTCGTGAAATTGTTTTTCGCTTACTGCGCGG
CAATCAGGGTGACCGACTACAACAGATTGCAGCCACTGGGGGGCAGATACAGCGCATTATCAAAGCCCTGGAGCGCTTAC
GAGCTGAATTCGACCAACCATTACGCATTGCTGAAATGGCACGCGAACTGGGAATGAGTGTCTCCAGCTTTCACCATCAC
TTTAAGGCTATTACGACGCTAACGCCGGTGCAATTTCAAAAACAGCTTAGATTACAAGAAGCACGCCGTTTGATGCTGAG
TGAAGGACTTGATGCTTCCAGTGCAGCCTTCCAGGTTGGGTATCACGATCCTTCGCATTTTACACGCGATTATAAACGGT
TCTTTGGTACAACACCACTGCGTGACATGAAACGTTTACGGGCAATGACAGCCCTGGATGACTGA

Upstream 100 bases:

>100_bases
TTGTAGAGAAAGGAGAGGTGTCTGTGATAGAATGATAGTCCAGCATTATTGAATGATCCTGTACGTTCTTTGAAGTAATC
TCCAAAGCCAGAAAGAGCTT

Downstream 100 bases:

>100_bases
TCTGGTGTTATCCATACTAATTCCTGCATCAGTCAACTTGATTGTTAGTGATACCGCTTGCTGCATACAGCTTCGCTGAA
TTTGGTATCACAATCATTTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLAVADPSTVRETPIAGKRAALTEYVLRLFRQYESDTLELPGGLRLYYTTRPTSKRHGVSTPALCVVLQGAKEVVLGSDR
YCYDAQHYLITAAALPITTRVIAASPEQPYLGIVLQLDPALVGSVIAEAGQSGLTNRSVCAFHVSPLEGKLLDAVTRLVR
LAEDPPEEANFLRPLIVREIVFRLLRGNQGDRLQQIAATGGQIQRIIKALERLRAEFDQPLRIAEMARELGMSVSSFHHH
FKAITTLTPVQFQKQLRLQEARRLMLSEGLDASSAAFQVGYHDPSHFTRDYKRFFGTTPLRDMKRLRAMTALDD

Sequences:

>Translated_314_residues
MLAVADPSTVRETPIAGKRAALTEYVLRLFRQYESDTLELPGGLRLYYTTRPTSKRHGVSTPALCVVLQGAKEVVLGSDR
YCYDAQHYLITAAALPITTRVIAASPEQPYLGIVLQLDPALVGSVIAEAGQSGLTNRSVCAFHVSPLEGKLLDAVTRLVR
LAEDPPEEANFLRPLIVREIVFRLLRGNQGDRLQQIAATGGQIQRIIKALERLRAEFDQPLRIAEMARELGMSVSSFHHH
FKAITTLTPVQFQKQLRLQEARRLMLSEGLDASSAAFQVGYHDPSHFTRDYKRFFGTTPLRDMKRLRAMTALDD
>Mature_314_residues
MLAVADPSTVRETPIAGKRAALTEYVLRLFRQYESDTLELPGGLRLYYTTRPTSKRHGVSTPALCVVLQGAKEVVLGSDR
YCYDAQHYLITAAALPITTRVIAASPEQPYLGIVLQLDPALVGSVIAEAGQSGLTNRSVCAFHVSPLEGKLLDAVTRLVR
LAEDPPEEANFLRPLIVREIVFRLLRGNQGDRLQQIAATGGQIQRIIKALERLRAEFDQPLRIAEMARELGMSVSSFHHH
FKAITTLTPVQFQKQLRLQEARRLMLSEGLDASSAAFQVGYHDPSHFTRDYKRFFGTTPLRDMKRLRAMTALDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=268, Percent_Identity=32.089552238806, Blast_Score=147, Evalue=7e-37,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35010; Mature: 35010

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAVADPSTVRETPIAGKRAALTEYVLRLFRQYESDTLELPGGLRLYYTTRPTSKRHGVS
CCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEECCCCCCCCCCC
TPALCVVLQGAKEVVLGSDRYCYDAQHYLITAAALPITTRVIAASPEQPYLGIVLQLDPA
CHHHHHEECCCHHEEECCCCCEECCHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEECHH
LVGSVIAEAGQSGLTNRSVCAFHVSPLEGKLLDAVTRLVRLAEDPPEEANFLRPLIVREI
HHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VFRLLRGNQGDRLQQIAATGGQIQRIIKALERLRAEFDQPLRIAEMARELGMSVSSFHHH
HHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHH
FKAITTLTPVQFQKQLRLQEARRLMLSEGLDASSAAFQVGYHDPSHFTRDYKRFFGTTPL
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCH
RDMKRLRAMTALDD
HHHHHHHHHHHCCC
>Mature Secondary Structure
MLAVADPSTVRETPIAGKRAALTEYVLRLFRQYESDTLELPGGLRLYYTTRPTSKRHGVS
CCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCCEEEEEECCCCCCCCCCC
TPALCVVLQGAKEVVLGSDRYCYDAQHYLITAAALPITTRVIAASPEQPYLGIVLQLDPA
CHHHHHEECCCHHEEECCCCCEECCHHHHHHHHHHHHHHHEEECCCCCCCEEEEEEECHH
LVGSVIAEAGQSGLTNRSVCAFHVSPLEGKLLDAVTRLVRLAEDPPEEANFLRPLIVREI
HHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
VFRLLRGNQGDRLQQIAATGGQIQRIIKALERLRAEFDQPLRIAEMARELGMSVSSFHHH
HHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHH
FKAITTLTPVQFQKQLRLQEARRLMLSEGLDASSAAFQVGYHDPSHFTRDYKRFFGTTPL
HHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCH
RDMKRLRAMTALDD
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]